miRNA display CGI


Results 61 - 80 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33376 5' -42.5 NC_007605.1 + 102332 0.67 1
Target:  5'- cAGCUUcAUGGucgUGGACCAcgACUc -3'
miRNA:   3'- uUCGGA-UACCua-ACCUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 30960 0.67 1
Target:  5'- cGGCCUaggcccggggaaGUGGAgggGGAUCGcCCg -3'
miRNA:   3'- uUCGGA------------UACCUaa-CCUGGUuGG- -5'
33376 5' -42.5 NC_007605.1 + 92505 0.67 1
Target:  5'- -uGCUg--GGcgUGGACCGcgcgGCCa -3'
miRNA:   3'- uuCGGauaCCuaACCUGGU----UGG- -5'
33376 5' -42.5 NC_007605.1 + 159756 0.67 1
Target:  5'- cGAGCC-AUGcagcGGUUGGGCCGAg- -3'
miRNA:   3'- -UUCGGaUAC----CUAACCUGGUUgg -5'
33376 5' -42.5 NC_007605.1 + 163223 0.67 0.999999
Target:  5'- cGGCCUGgggacccugcaGGAggGGACCuggGACCc -3'
miRNA:   3'- uUCGGAUa----------CCUaaCCUGG---UUGG- -5'
33376 5' -42.5 NC_007605.1 + 123568 0.67 0.999999
Target:  5'- -uGCCgg-GGAgaGGGCCAGgCa -3'
miRNA:   3'- uuCGGauaCCUaaCCUGGUUgG- -5'
33376 5' -42.5 NC_007605.1 + 136446 0.67 1
Target:  5'- uGGGUCUGUGGAggccgguggUGGGCUcugaaguGCCu -3'
miRNA:   3'- -UUCGGAUACCUa--------ACCUGGu------UGG- -5'
33376 5' -42.5 NC_007605.1 + 48487 0.67 1
Target:  5'- gAGGCCUucuucUGGAggGaGGCCAauagaGCCg -3'
miRNA:   3'- -UUCGGAu----ACCUaaC-CUGGU-----UGG- -5'
33376 5' -42.5 NC_007605.1 + 88515 0.67 1
Target:  5'- gGAGCCUG-GG---GGGCCGGCg -3'
miRNA:   3'- -UUCGGAUaCCuaaCCUGGUUGg -5'
33376 5' -42.5 NC_007605.1 + 51173 0.68 0.999996
Target:  5'- gGGGCCUG-GGAgagugaugGGGgCGGCCa -3'
miRNA:   3'- -UUCGGAUaCCUaa------CCUgGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 122712 0.68 0.999998
Target:  5'- uGGCCUAcaac--GGGCCAGCCu -3'
miRNA:   3'- uUCGGAUaccuaaCCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 107715 0.68 0.999998
Target:  5'- -uGCCgcaGGAagGaGGCCAGCCa -3'
miRNA:   3'- uuCGGauaCCUaaC-CUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 371 0.68 0.999996
Target:  5'- -uGCCUAacaUGGAggauugaGGACCcACCu -3'
miRNA:   3'- uuCGGAU---ACCUaa-----CCUGGuUGG- -5'
33376 5' -42.5 NC_007605.1 + 53618 0.68 0.999997
Target:  5'- -uGCCauccAUGGAguucUGGGCCAugCc -3'
miRNA:   3'- uuCGGa---UACCUa---ACCUGGUugG- -5'
33376 5' -42.5 NC_007605.1 + 3163 0.68 0.999997
Target:  5'- cGGGCUc--GGAgaaaugGGGCCGGCCa -3'
miRNA:   3'- -UUCGGauaCCUaa----CCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 63510 0.68 0.999997
Target:  5'- cGGGCCUGUGGucagcaaGGCCAuCCc -3'
miRNA:   3'- -UUCGGAUACCuaac---CUGGUuGG- -5'
33376 5' -42.5 NC_007605.1 + 102227 0.68 0.999997
Target:  5'- uGAGCguuaUGUGGAcUGGAUCugcGCCa -3'
miRNA:   3'- -UUCGg---AUACCUaACCUGGu--UGG- -5'
33376 5' -42.5 NC_007605.1 + 12762 0.68 0.999998
Target:  5'- -cGCCUGgcgccuccucgGGGCCAGCCg -3'
miRNA:   3'- uuCGGAUaccuaa-----CCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 114892 0.68 0.999998
Target:  5'- -uGCCUAUGGAUaGauaGCCAcCCg -3'
miRNA:   3'- uuCGGAUACCUAaCc--UGGUuGG- -5'
33376 5' -42.5 NC_007605.1 + 15831 0.68 0.999998
Target:  5'- -cGCCUGgcgccuccucgGGGCCAGCCg -3'
miRNA:   3'- uuCGGAUaccuaa-----CCUGGUUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.