Results 61 - 80 of 190 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
33376 | 5' | -42.5 | NC_007605.1 | + | 102332 | 0.67 | 1 |
Target: 5'- cAGCUUcAUGGucgUGGACCAcgACUc -3' miRNA: 3'- uUCGGA-UACCua-ACCUGGU--UGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 30960 | 0.67 | 1 |
Target: 5'- cGGCCUaggcccggggaaGUGGAgggGGAUCGcCCg -3' miRNA: 3'- uUCGGA------------UACCUaa-CCUGGUuGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 92505 | 0.67 | 1 |
Target: 5'- -uGCUg--GGcgUGGACCGcgcgGCCa -3' miRNA: 3'- uuCGGauaCCuaACCUGGU----UGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 159756 | 0.67 | 1 |
Target: 5'- cGAGCC-AUGcagcGGUUGGGCCGAg- -3' miRNA: 3'- -UUCGGaUAC----CUAACCUGGUUgg -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 163223 | 0.67 | 0.999999 |
Target: 5'- cGGCCUGgggacccugcaGGAggGGACCuggGACCc -3' miRNA: 3'- uUCGGAUa----------CCUaaCCUGG---UUGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 123568 | 0.67 | 0.999999 |
Target: 5'- -uGCCgg-GGAgaGGGCCAGgCa -3' miRNA: 3'- uuCGGauaCCUaaCCUGGUUgG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 136446 | 0.67 | 1 |
Target: 5'- uGGGUCUGUGGAggccgguggUGGGCUcugaaguGCCu -3' miRNA: 3'- -UUCGGAUACCUa--------ACCUGGu------UGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 48487 | 0.67 | 1 |
Target: 5'- gAGGCCUucuucUGGAggGaGGCCAauagaGCCg -3' miRNA: 3'- -UUCGGAu----ACCUaaC-CUGGU-----UGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 88515 | 0.67 | 1 |
Target: 5'- gGAGCCUG-GG---GGGCCGGCg -3' miRNA: 3'- -UUCGGAUaCCuaaCCUGGUUGg -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 51173 | 0.68 | 0.999996 |
Target: 5'- gGGGCCUG-GGAgagugaugGGGgCGGCCa -3' miRNA: 3'- -UUCGGAUaCCUaa------CCUgGUUGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 122712 | 0.68 | 0.999998 |
Target: 5'- uGGCCUAcaac--GGGCCAGCCu -3' miRNA: 3'- uUCGGAUaccuaaCCUGGUUGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 107715 | 0.68 | 0.999998 |
Target: 5'- -uGCCgcaGGAagGaGGCCAGCCa -3' miRNA: 3'- uuCGGauaCCUaaC-CUGGUUGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 371 | 0.68 | 0.999996 |
Target: 5'- -uGCCUAacaUGGAggauugaGGACCcACCu -3' miRNA: 3'- uuCGGAU---ACCUaa-----CCUGGuUGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 53618 | 0.68 | 0.999997 |
Target: 5'- -uGCCauccAUGGAguucUGGGCCAugCc -3' miRNA: 3'- uuCGGa---UACCUa---ACCUGGUugG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 3163 | 0.68 | 0.999997 |
Target: 5'- cGGGCUc--GGAgaaaugGGGCCGGCCa -3' miRNA: 3'- -UUCGGauaCCUaa----CCUGGUUGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 63510 | 0.68 | 0.999997 |
Target: 5'- cGGGCCUGUGGucagcaaGGCCAuCCc -3' miRNA: 3'- -UUCGGAUACCuaac---CUGGUuGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 102227 | 0.68 | 0.999997 |
Target: 5'- uGAGCguuaUGUGGAcUGGAUCugcGCCa -3' miRNA: 3'- -UUCGg---AUACCUaACCUGGu--UGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 12762 | 0.68 | 0.999998 |
Target: 5'- -cGCCUGgcgccuccucgGGGCCAGCCg -3' miRNA: 3'- uuCGGAUaccuaa-----CCUGGUUGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 114892 | 0.68 | 0.999998 |
Target: 5'- -uGCCUAUGGAUaGauaGCCAcCCg -3' miRNA: 3'- uuCGGAUACCUAaCc--UGGUuGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 15831 | 0.68 | 0.999998 |
Target: 5'- -cGCCUGgcgccuccucgGGGCCAGCCg -3' miRNA: 3'- uuCGGAUaccuaa-----CCUGGUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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