miRNA display CGI


Results 41 - 60 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33376 5' -42.5 NC_007605.1 + 148921 0.71 0.999744
Target:  5'- gAGGCCUG-GGAggGGGCgAGCa -3'
miRNA:   3'- -UUCGGAUaCCUaaCCUGgUUGg -5'
33376 5' -42.5 NC_007605.1 + 104119 0.71 0.999744
Target:  5'- gAGGCCUAUGGAg-GGGCUcuuGGCa -3'
miRNA:   3'- -UUCGGAUACCUaaCCUGG---UUGg -5'
33376 5' -42.5 NC_007605.1 + 128217 0.71 0.999744
Target:  5'- cAAGUCc--GGAUUGGgcACCAGCCu -3'
miRNA:   3'- -UUCGGauaCCUAACC--UGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 61260 0.71 0.999744
Target:  5'- gGAGCCg--GGGccgGGGCCuGCCa -3'
miRNA:   3'- -UUCGGauaCCUaa-CCUGGuUGG- -5'
33376 5' -42.5 NC_007605.1 + 104453 0.71 0.999744
Target:  5'- uAGCCgggGUGGA--GGGCCGAUa -3'
miRNA:   3'- uUCGGa--UACCUaaCCUGGUUGg -5'
33376 5' -42.5 NC_007605.1 + 52292 0.71 0.999804
Target:  5'- cGGGCCguacuuUGGuugUGGACCAGgCCc -3'
miRNA:   3'- -UUCGGau----ACCua-ACCUGGUU-GG- -5'
33376 5' -42.5 NC_007605.1 + 63332 0.71 0.999804
Target:  5'- gGGGCCUGacgcGGA-UGG-CCAACCu -3'
miRNA:   3'- -UUCGGAUa---CCUaACCuGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 83859 0.71 0.999804
Target:  5'- -uGCUaUAUGGAUUGGGCUgggcacgaaaAACCg -3'
miRNA:   3'- uuCGG-AUACCUAACCUGG----------UUGG- -5'
33376 5' -42.5 NC_007605.1 + 62366 0.71 0.999804
Target:  5'- aAGGCaaagGUGGccGUUGGGCCAgagACCg -3'
miRNA:   3'- -UUCGga--UACC--UAACCUGGU---UGG- -5'
33376 5' -42.5 NC_007605.1 + 151693 0.71 0.99985
Target:  5'- cAGGCCUggcggGUGGAgauagGGACCAGa- -3'
miRNA:   3'- -UUCGGA-----UACCUaa---CCUGGUUgg -5'
33376 5' -42.5 NC_007605.1 + 84650 0.71 0.99985
Target:  5'- cGAGCC--UGGAcacucagUGGGCCGACg -3'
miRNA:   3'- -UUCGGauACCUa------ACCUGGUUGg -5'
33376 5' -42.5 NC_007605.1 + 81556 0.71 0.99985
Target:  5'- gGGGCCUGUgcuaccGGAcacgGGGCCAuGCCg -3'
miRNA:   3'- -UUCGGAUA------CCUaa--CCUGGU-UGG- -5'
33376 5' -42.5 NC_007605.1 + 40412 0.71 0.999887
Target:  5'- uAGGCCUGUGccauggGGACCcccuGCCa -3'
miRNA:   3'- -UUCGGAUACcuaa--CCUGGu---UGG- -5'
33376 5' -42.5 NC_007605.1 + 154177 0.7 0.999915
Target:  5'- aGGGCCgcacgauguUGGAgcGGGCCAagGCCu -3'
miRNA:   3'- -UUCGGau-------ACCUaaCCUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 52507 0.7 0.999915
Target:  5'- cAGCCUGUaGGugaGGACCGAguCCg -3'
miRNA:   3'- uUCGGAUA-CCuaaCCUGGUU--GG- -5'
33376 5' -42.5 NC_007605.1 + 59054 0.7 0.999915
Target:  5'- -uGCCUA-GGAUgcggaGGGCCgAGCCu -3'
miRNA:   3'- uuCGGAUaCCUAa----CCUGG-UUGG- -5'
33376 5' -42.5 NC_007605.1 + 36660 0.7 0.999937
Target:  5'- cAGGCCa---GGUUGGuCCAGCCa -3'
miRNA:   3'- -UUCGGauacCUAACCuGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 31306 0.7 0.999937
Target:  5'- gGGGCCUGUGGuggUGaGCCugcuGCCc -3'
miRNA:   3'- -UUCGGAUACCua-ACcUGGu---UGG- -5'
33376 5' -42.5 NC_007605.1 + 34375 0.7 0.999937
Target:  5'- gGGGCCUGUGGuggUGaGCCugcuGCCc -3'
miRNA:   3'- -UUCGGAUACCua-ACcUGGu---UGG- -5'
33376 5' -42.5 NC_007605.1 + 28237 0.7 0.999937
Target:  5'- gGGGCCUGUGGuggUGaGCCugcuGCCc -3'
miRNA:   3'- -UUCGGAUACCua-ACcUGGu---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.