miRNA display CGI


Results 61 - 80 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33376 5' -42.5 NC_007605.1 + 19031 0.7 0.999937
Target:  5'- gGGGCCUGUGGuggUGaGCCugcuGCCc -3'
miRNA:   3'- -UUCGGAUACCua-ACcUGGu---UGG- -5'
33376 5' -42.5 NC_007605.1 + 12893 0.7 0.999937
Target:  5'- gGGGCCUGUGGuggUGaGCCugcuGCCc -3'
miRNA:   3'- -UUCGGAUACCua-ACcUGGu---UGG- -5'
33376 5' -42.5 NC_007605.1 + 15962 0.7 0.999937
Target:  5'- gGGGCCUGUGGuggUGaGCCugcuGCCc -3'
miRNA:   3'- -UUCGGAUACCua-ACcUGGu---UGG- -5'
33376 5' -42.5 NC_007605.1 + 22100 0.7 0.999937
Target:  5'- gGGGCCUGUGGuggUGaGCCugcuGCCc -3'
miRNA:   3'- -UUCGGAUACCua-ACcUGGu---UGG- -5'
33376 5' -42.5 NC_007605.1 + 25168 0.7 0.999937
Target:  5'- gGGGCCUGUGGuggUGaGCCugcuGCCc -3'
miRNA:   3'- -UUCGGAUACCua-ACcUGGu---UGG- -5'
33376 5' -42.5 NC_007605.1 + 124162 0.7 0.999954
Target:  5'- uGGCCgcagGGGUcgaGGAUCAGCCc -3'
miRNA:   3'- uUCGGaua-CCUAa--CCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 36860 0.7 0.999954
Target:  5'- gGGGacaUGUGGc-UGGACCAACCu -3'
miRNA:   3'- -UUCgg-AUACCuaACCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 88342 0.7 0.999966
Target:  5'- --uUCUAUGGGcUGGGCCuuACCa -3'
miRNA:   3'- uucGGAUACCUaACCUGGu-UGG- -5'
33376 5' -42.5 NC_007605.1 + 144439 0.7 0.999966
Target:  5'- gGAGCCUGUag---GGGCCAACa -3'
miRNA:   3'- -UUCGGAUAccuaaCCUGGUUGg -5'
33376 5' -42.5 NC_007605.1 + 42350 0.69 0.999976
Target:  5'- uGGCCUggAUGGccUGGugCAugCa -3'
miRNA:   3'- uUCGGA--UACCuaACCugGUugG- -5'
33376 5' -42.5 NC_007605.1 + 51287 0.69 0.999976
Target:  5'- gGGGCuCUGUGGGcUGGGagGGCCa -3'
miRNA:   3'- -UUCG-GAUACCUaACCUggUUGG- -5'
33376 5' -42.5 NC_007605.1 + 133496 0.69 0.999976
Target:  5'- -cGCCcucccGUGGAgggGGACCuGACCu -3'
miRNA:   3'- uuCGGa----UACCUaa-CCUGG-UUGG- -5'
33376 5' -42.5 NC_007605.1 + 144609 0.69 0.999976
Target:  5'- cAAGgCgg-GGGUUGGGCCcagGGCCa -3'
miRNA:   3'- -UUCgGauaCCUAACCUGG---UUGG- -5'
33376 5' -42.5 NC_007605.1 + 47598 0.69 0.999983
Target:  5'- cAGGCUccUGGAUcugGGGCUGGCCu -3'
miRNA:   3'- -UUCGGauACCUAa--CCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 63568 0.69 0.999985
Target:  5'- gAGGCCUuuGUGGAUcUGGACgCGuggcucuccggcggcGCCg -3'
miRNA:   3'- -UUCGGA--UACCUA-ACCUG-GU---------------UGG- -5'
33376 5' -42.5 NC_007605.1 + 122304 0.69 0.999988
Target:  5'- -cGCUUGUcggcgGGAUucgGGGCCAGCUg -3'
miRNA:   3'- uuCGGAUA-----CCUAa--CCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 75528 0.69 0.999988
Target:  5'- cGAGCCUggccAUGGGUgauagUGGGCUGAgCg -3'
miRNA:   3'- -UUCGGA----UACCUA-----ACCUGGUUgG- -5'
33376 5' -42.5 NC_007605.1 + 122750 0.69 0.999988
Target:  5'- cGGCCUcgGGGU-GGACUuucagcacguGGCCc -3'
miRNA:   3'- uUCGGAuaCCUAaCCUGG----------UUGG- -5'
33376 5' -42.5 NC_007605.1 + 132397 0.69 0.999988
Target:  5'- cAGCCgccGGGc-GGGCCGGCCu -3'
miRNA:   3'- uUCGGauaCCUaaCCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 161507 0.69 0.999988
Target:  5'- uGGGCCgg-GGcgUGGACaggAACCu -3'
miRNA:   3'- -UUCGGauaCCuaACCUGg--UUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.