miRNA display CGI


Results 81 - 100 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33376 5' -42.5 NC_007605.1 + 161507 0.69 0.999988
Target:  5'- uGGGCCgg-GGcgUGGACaggAACCu -3'
miRNA:   3'- -UUCGGauaCCuaACCUGg--UUGG- -5'
33376 5' -42.5 NC_007605.1 + 106403 0.69 0.999991
Target:  5'- aAAGCUgcucgggggaugAUGGGcgGGACCAACa -3'
miRNA:   3'- -UUCGGa-----------UACCUaaCCUGGUUGg -5'
33376 5' -42.5 NC_007605.1 + 54526 0.69 0.999992
Target:  5'- uAGCCgcggGGGUggcGGGCCAAgCg -3'
miRNA:   3'- uUCGGaua-CCUAa--CCUGGUUgG- -5'
33376 5' -42.5 NC_007605.1 + 3665 0.69 0.999992
Target:  5'- cAGCCcg-GGGUagguccccUGGACCuGCCg -3'
miRNA:   3'- uUCGGauaCCUA--------ACCUGGuUGG- -5'
33376 5' -42.5 NC_007605.1 + 116801 0.69 0.999992
Target:  5'- uGGCCgggGUGGAaUGucaGACCAagGCCg -3'
miRNA:   3'- uUCGGa--UACCUaAC---CUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 91632 0.69 0.999992
Target:  5'- cAGGCCcuuccauccacccGGAUccccgUGGGCCAACCg -3'
miRNA:   3'- -UUCGGaua----------CCUA-----ACCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 71601 0.68 0.999994
Target:  5'- aGGGCCgugcaggUAUGGcgUGGGCCGGa- -3'
miRNA:   3'- -UUCGG-------AUACCuaACCUGGUUgg -5'
33376 5' -42.5 NC_007605.1 + 43990 0.68 0.999994
Target:  5'- uAAGCgUAgagaaggcUGGGUUGGGaaaguCCAGCCu -3'
miRNA:   3'- -UUCGgAU--------ACCUAACCU-----GGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 69100 0.68 0.999994
Target:  5'- -uGCCUGUGGccccGGCUGGCCa -3'
miRNA:   3'- uuCGGAUACCuaacCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 85103 0.68 0.999994
Target:  5'- uGGCCacUGGcgUGGGgCAGCUg -3'
miRNA:   3'- uUCGGauACCuaACCUgGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 64824 0.68 0.999994
Target:  5'- cGGCCUAcaUGGAgcccUGG-CaCAGCCa -3'
miRNA:   3'- uUCGGAU--ACCUa---ACCuG-GUUGG- -5'
33376 5' -42.5 NC_007605.1 + 136852 0.68 0.999994
Target:  5'- gAGGCacggGUGGAgggGGGCCAaagagGCCc -3'
miRNA:   3'- -UUCGga--UACCUaa-CCUGGU-----UGG- -5'
33376 5' -42.5 NC_007605.1 + 51173 0.68 0.999996
Target:  5'- gGGGCCUG-GGAgagugaugGGGgCGGCCa -3'
miRNA:   3'- -UUCGGAUaCCUaa------CCUgGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 51064 0.68 0.999996
Target:  5'- gGAGCUccagGGAaucuUUGGGCCAugGCCu -3'
miRNA:   3'- -UUCGGaua-CCU----AACCUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 371 0.68 0.999996
Target:  5'- -uGCCUAacaUGGAggauugaGGACCcACCu -3'
miRNA:   3'- uuCGGAU---ACCUaa-----CCUGGuUGG- -5'
33376 5' -42.5 NC_007605.1 + 3163 0.68 0.999997
Target:  5'- cGGGCUc--GGAgaaaugGGGCCGGCCa -3'
miRNA:   3'- -UUCGGauaCCUaa----CCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 147842 0.68 0.999997
Target:  5'- gGAGCCgagagGGA-UGGGCCcGCUu -3'
miRNA:   3'- -UUCGGaua--CCUaACCUGGuUGG- -5'
33376 5' -42.5 NC_007605.1 + 53618 0.68 0.999997
Target:  5'- -uGCCauccAUGGAguucUGGGCCAugCc -3'
miRNA:   3'- uuCGGa---UACCUa---ACCUGGUugG- -5'
33376 5' -42.5 NC_007605.1 + 63510 0.68 0.999997
Target:  5'- cGGGCCUGUGGucagcaaGGCCAuCCc -3'
miRNA:   3'- -UUCGGAUACCuaac---CUGGUuGG- -5'
33376 5' -42.5 NC_007605.1 + 102227 0.68 0.999997
Target:  5'- uGAGCguuaUGUGGAcUGGAUCugcGCCa -3'
miRNA:   3'- -UUCGg---AUACCUaACCUGGu--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.