miRNA display CGI


Results 101 - 120 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33376 5' -42.5 NC_007605.1 + 63510 0.68 0.999997
Target:  5'- cGGGCCUGUGGucagcaaGGCCAuCCc -3'
miRNA:   3'- -UUCGGAUACCuaac---CUGGUuGG- -5'
33376 5' -42.5 NC_007605.1 + 102227 0.68 0.999997
Target:  5'- uGAGCguuaUGUGGAcUGGAUCugcGCCa -3'
miRNA:   3'- -UUCGg---AUACCUaACCUGGu--UGG- -5'
33376 5' -42.5 NC_007605.1 + 147842 0.68 0.999997
Target:  5'- gGAGCCgagagGGA-UGGGCCcGCUu -3'
miRNA:   3'- -UUCGGaua--CCUaACCUGGuUGG- -5'
33376 5' -42.5 NC_007605.1 + 107715 0.68 0.999998
Target:  5'- -uGCCgcaGGAagGaGGCCAGCCa -3'
miRNA:   3'- uuCGGauaCCUaaC-CUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 15831 0.68 0.999998
Target:  5'- -cGCCUGgcgccuccucgGGGCCAGCCg -3'
miRNA:   3'- uuCGGAUaccuaa-----CCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 18900 0.68 0.999998
Target:  5'- -cGCCUGgcgccuccucgGGGCCAGCCg -3'
miRNA:   3'- uuCGGAUaccuaa-----CCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 21968 0.68 0.999998
Target:  5'- -cGCCUGgcgccuccucgGGGCCAGCCg -3'
miRNA:   3'- uuCGGAUaccuaa-----CCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 25037 0.68 0.999998
Target:  5'- -cGCCUGgcgccuccucgGGGCCAGCCg -3'
miRNA:   3'- uuCGGAUaccuaa-----CCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 28106 0.68 0.999998
Target:  5'- -cGCCUGgcgccuccucgGGGCCAGCCg -3'
miRNA:   3'- uuCGGAUaccuaa-----CCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 31175 0.68 0.999998
Target:  5'- -cGCCUGgcgccuccucgGGGCCAGCCg -3'
miRNA:   3'- uuCGGAUaccuaa-----CCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 133769 0.68 0.999998
Target:  5'- aGAGCUgcUGGAgcUGGGCCcggagAGCCu -3'
miRNA:   3'- -UUCGGauACCUa-ACCUGG-----UUGG- -5'
33376 5' -42.5 NC_007605.1 + 34244 0.68 0.999998
Target:  5'- -cGCCUGgcgccuccucgGGGCCAGCCg -3'
miRNA:   3'- uuCGGAUaccuaa-----CCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 114892 0.68 0.999998
Target:  5'- -uGCCUAUGGAUaGauaGCCAcCCg -3'
miRNA:   3'- uuCGGAUACCUAaCc--UGGUuGG- -5'
33376 5' -42.5 NC_007605.1 + 122712 0.68 0.999998
Target:  5'- uGGCCUAcaac--GGGCCAGCCu -3'
miRNA:   3'- uUCGGAUaccuaaCCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 12762 0.68 0.999998
Target:  5'- -cGCCUGgcgccuccucgGGGCCAGCCg -3'
miRNA:   3'- uuCGGAUaccuaa-----CCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 56997 0.68 0.999998
Target:  5'- gGGGCUaaUAaGGAguagGGACCGAUCg -3'
miRNA:   3'- -UUCGG--AUaCCUaa--CCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 75790 0.68 0.999998
Target:  5'- cAGCCagGUGGAUuuugagcuccgaUGGACgCAGCg -3'
miRNA:   3'- uUCGGa-UACCUA------------ACCUG-GUUGg -5'
33376 5' -42.5 NC_007605.1 + 45199 0.67 0.999999
Target:  5'- cAGCCUccggucuggugAUGGccaGGGCCAACUc -3'
miRNA:   3'- uUCGGA-----------UACCuaaCCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 108530 0.67 0.999999
Target:  5'- -cGCCUAUGGAguuGACUcgucgucggcaaagaGACCa -3'
miRNA:   3'- uuCGGAUACCUaacCUGG---------------UUGG- -5'
33376 5' -42.5 NC_007605.1 + 87730 0.67 0.999999
Target:  5'- uGAGuCCUucGGAUacUGGGCCuccuGCCg -3'
miRNA:   3'- -UUC-GGAuaCCUA--ACCUGGu---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.