miRNA display CGI


Results 41 - 60 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33376 5' -42.5 NC_007605.1 + 151194 0.67 1
Target:  5'- -cGCCccccGUGGcgUGGuACCGACa -3'
miRNA:   3'- uuCGGa---UACCuaACC-UGGUUGg -5'
33376 5' -42.5 NC_007605.1 + 102332 0.67 1
Target:  5'- cAGCUUcAUGGucgUGGACCAcgACUc -3'
miRNA:   3'- uUCGGA-UACCua-ACCUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 12547 0.67 1
Target:  5'- cGGCCUaggcccggggaaGUGGAgggGGAUCGcCCg -3'
miRNA:   3'- uUCGGA------------UACCUaa-CCUGGUuGG- -5'
33376 5' -42.5 NC_007605.1 + 15616 0.67 1
Target:  5'- cGGCCUaggcccggggaaGUGGAgggGGAUCGcCCg -3'
miRNA:   3'- uUCGGA------------UACCUaa-CCUGGUuGG- -5'
33376 5' -42.5 NC_007605.1 + 151946 0.66 1
Target:  5'- -uGCCUuUGGug-GGGCCuuCCc -3'
miRNA:   3'- uuCGGAuACCuaaCCUGGuuGG- -5'
33376 5' -42.5 NC_007605.1 + 74679 0.66 1
Target:  5'- cGAGCCgagAUaGAUcUGGGCCuGCCc -3'
miRNA:   3'- -UUCGGa--UAcCUA-ACCUGGuUGG- -5'
33376 5' -42.5 NC_007605.1 + 51673 0.67 1
Target:  5'- uGGCCacgGUGGg--GGGCCuGGCCu -3'
miRNA:   3'- uUCGGa--UACCuaaCCUGG-UUGG- -5'
33376 5' -42.5 NC_007605.1 + 48455 0.67 1
Target:  5'- gGAGCUcGUGGGggccgggGGGCCcuGCCu -3'
miRNA:   3'- -UUCGGaUACCUaa-----CCUGGu-UGG- -5'
33376 5' -42.5 NC_007605.1 + 155256 0.67 1
Target:  5'- aGGGCCUGguaGGA--GGGCCAggagcugucuucacGCCg -3'
miRNA:   3'- -UUCGGAUa--CCUaaCCUGGU--------------UGG- -5'
33376 5' -42.5 NC_007605.1 + 34029 0.67 1
Target:  5'- cGGCCUaggcccggggaaGUGGAgggGGAUCGcCCg -3'
miRNA:   3'- uUCGGA------------UACCUaa-CCUGGUuGG- -5'
33376 5' -42.5 NC_007605.1 + 30960 0.67 1
Target:  5'- cGGCCUaggcccggggaaGUGGAgggGGAUCGcCCg -3'
miRNA:   3'- uUCGGA------------UACCUaa-CCUGGUuGG- -5'
33376 5' -42.5 NC_007605.1 + 27892 0.67 1
Target:  5'- cGGCCUaggcccggggaaGUGGAgggGGAUCGcCCg -3'
miRNA:   3'- uUCGGA------------UACCUaa-CCUGGUuGG- -5'
33376 5' -42.5 NC_007605.1 + 24823 0.67 1
Target:  5'- cGGCCUaggcccggggaaGUGGAgggGGAUCGcCCg -3'
miRNA:   3'- uUCGGA------------UACCUaa-CCUGGUuGG- -5'
33376 5' -42.5 NC_007605.1 + 21754 0.67 1
Target:  5'- cGGCCUaggcccggggaaGUGGAgggGGAUCGcCCg -3'
miRNA:   3'- uUCGGA------------UACCUaa-CCUGGUuGG- -5'
33376 5' -42.5 NC_007605.1 + 18685 0.67 1
Target:  5'- cGGCCUaggcccggggaaGUGGAgggGGAUCGcCCg -3'
miRNA:   3'- uUCGGA------------UACCUaa-CCUGGUuGG- -5'
33376 5' -42.5 NC_007605.1 + 159756 0.67 1
Target:  5'- cGAGCC-AUGcagcGGUUGGGCCGAg- -3'
miRNA:   3'- -UUCGGaUAC----CUAACCUGGUUgg -5'
33376 5' -42.5 NC_007605.1 + 163223 0.67 0.999999
Target:  5'- cGGCCUGgggacccugcaGGAggGGACCuggGACCc -3'
miRNA:   3'- uUCGGAUa----------CCUaaCCUGG---UUGG- -5'
33376 5' -42.5 NC_007605.1 + 14759 0.67 0.999999
Target:  5'- gGGGCCcgggccGGGUUGGuCCAggGCCu -3'
miRNA:   3'- -UUCGGaua---CCUAACCuGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 20897 0.67 0.999999
Target:  5'- gGGGCCcgggccGGGUUGGuCCAggGCCu -3'
miRNA:   3'- -UUCGGaua---CCUAACCuGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 87730 0.67 0.999999
Target:  5'- uGAGuCCUucGGAUacUGGGCCuccuGCCg -3'
miRNA:   3'- -UUC-GGAuaCCUA--ACCUGGu---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.