miRNA display CGI


Results 61 - 80 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33376 5' -42.5 NC_007605.1 + 17828 0.67 0.999999
Target:  5'- gGGGCCcgggccGGGUUGGuCCAggGCCu -3'
miRNA:   3'- -UUCGGaua---CCUAACCuGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 96948 0.67 0.999999
Target:  5'- uGGCCUucuaccUGGAggGGGCCuGCg -3'
miRNA:   3'- uUCGGAu-----ACCUaaCCUGGuUGg -5'
33376 5' -42.5 NC_007605.1 + 160492 0.68 0.999999
Target:  5'- aGAGCCUGgaacgggcccUGGAUcugcUGGGCCG-CUu -3'
miRNA:   3'- -UUCGGAU----------ACCUA----ACCUGGUuGG- -5'
33376 5' -42.5 NC_007605.1 + 20897 0.67 0.999999
Target:  5'- gGGGCCcgggccGGGUUGGuCCAggGCCu -3'
miRNA:   3'- -UUCGGaua---CCUAACCuGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 123568 0.67 0.999999
Target:  5'- -uGCCgg-GGAgaGGGCCAGgCa -3'
miRNA:   3'- uuCGGauaCCUaaCCUGGUUgG- -5'
33376 5' -42.5 NC_007605.1 + 61459 0.68 0.999999
Target:  5'- -cGCCUGUGGca-GGccCCGGCCc -3'
miRNA:   3'- uuCGGAUACCuaaCCu-GGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 72024 0.68 0.999999
Target:  5'- -cGCCaGUGGccgGGGCCGuggaGCCg -3'
miRNA:   3'- uuCGGaUACCuaaCCUGGU----UGG- -5'
33376 5' -42.5 NC_007605.1 + 30104 0.67 0.999999
Target:  5'- gGGGCCcgggccGGGUUGGuCCAggGCCu -3'
miRNA:   3'- -UUCGGaua---CCUAACCuGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 27035 0.67 0.999999
Target:  5'- gGGGCCcgggccGGGUUGGuCCAggGCCu -3'
miRNA:   3'- -UUCGGaua---CCUAACCuGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 33172 0.67 0.999999
Target:  5'- gGGGCCcgggccGGGUUGGuCCAggGCCu -3'
miRNA:   3'- -UUCGGaua---CCUAACCuGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 14759 0.67 0.999999
Target:  5'- gGGGCCcgggccGGGUUGGuCCAggGCCu -3'
miRNA:   3'- -UUCGGaua---CCUAACCuGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 163223 0.67 0.999999
Target:  5'- cGGCCUGgggacccugcaGGAggGGACCuggGACCc -3'
miRNA:   3'- uUCGGAUa----------CCUaaCCUGG---UUGG- -5'
33376 5' -42.5 NC_007605.1 + 23966 0.67 0.999999
Target:  5'- gGGGCCcgggccGGGUUGGuCCAggGCCu -3'
miRNA:   3'- -UUCGGaua---CCUAACCuGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 12762 0.68 0.999998
Target:  5'- -cGCCUGgcgccuccucgGGGCCAGCCg -3'
miRNA:   3'- uuCGGAUaccuaa-----CCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 15831 0.68 0.999998
Target:  5'- -cGCCUGgcgccuccucgGGGCCAGCCg -3'
miRNA:   3'- uuCGGAUaccuaa-----CCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 122712 0.68 0.999998
Target:  5'- uGGCCUAcaac--GGGCCAGCCu -3'
miRNA:   3'- uUCGGAUaccuaaCCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 107715 0.68 0.999998
Target:  5'- -uGCCgcaGGAagGaGGCCAGCCa -3'
miRNA:   3'- uuCGGauaCCUaaC-CUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 56997 0.68 0.999998
Target:  5'- gGGGCUaaUAaGGAguagGGACCGAUCg -3'
miRNA:   3'- -UUCGG--AUaCCUaa--CCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 114892 0.68 0.999998
Target:  5'- -uGCCUAUGGAUaGauaGCCAcCCg -3'
miRNA:   3'- uuCGGAUACCUAaCc--UGGUuGG- -5'
33376 5' -42.5 NC_007605.1 + 133769 0.68 0.999998
Target:  5'- aGAGCUgcUGGAgcUGGGCCcggagAGCCu -3'
miRNA:   3'- -UUCGGauACCUa-ACCUGG-----UUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.