Results 81 - 100 of 190 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33376 | 5' | -42.5 | NC_007605.1 | + | 12762 | 0.68 | 0.999998 |
Target: 5'- -cGCCUGgcgccuccucgGGGCCAGCCg -3' miRNA: 3'- uuCGGAUaccuaa-----CCUGGUUGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 75790 | 0.68 | 0.999998 |
Target: 5'- cAGCCagGUGGAUuuugagcuccgaUGGACgCAGCg -3' miRNA: 3'- uUCGGa-UACCUA------------ACCUG-GUUGg -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 31175 | 0.68 | 0.999998 |
Target: 5'- -cGCCUGgcgccuccucgGGGCCAGCCg -3' miRNA: 3'- uuCGGAUaccuaa-----CCUGGUUGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 28106 | 0.68 | 0.999998 |
Target: 5'- -cGCCUGgcgccuccucgGGGCCAGCCg -3' miRNA: 3'- uuCGGAUaccuaa-----CCUGGUUGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 18900 | 0.68 | 0.999998 |
Target: 5'- -cGCCUGgcgccuccucgGGGCCAGCCg -3' miRNA: 3'- uuCGGAUaccuaa-----CCUGGUUGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 25037 | 0.68 | 0.999998 |
Target: 5'- -cGCCUGgcgccuccucgGGGCCAGCCg -3' miRNA: 3'- uuCGGAUaccuaa-----CCUGGUUGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 21968 | 0.68 | 0.999998 |
Target: 5'- -cGCCUGgcgccuccucgGGGCCAGCCg -3' miRNA: 3'- uuCGGAUaccuaa-----CCUGGUUGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 147842 | 0.68 | 0.999997 |
Target: 5'- gGAGCCgagagGGA-UGGGCCcGCUu -3' miRNA: 3'- -UUCGGaua--CCUaACCUGGuUGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 102227 | 0.68 | 0.999997 |
Target: 5'- uGAGCguuaUGUGGAcUGGAUCugcGCCa -3' miRNA: 3'- -UUCGg---AUACCUaACCUGGu--UGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 155203 | 0.68 | 0.999997 |
Target: 5'- aGAGaCCUcagcGUGGAgaUUGuGACCGGCUa -3' miRNA: 3'- -UUC-GGA----UACCU--AAC-CUGGUUGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 2899 | 0.68 | 0.999997 |
Target: 5'- aAGGCCUGuUGGcgccGGGCCGccGCCc -3' miRNA: 3'- -UUCGGAU-ACCuaa-CCUGGU--UGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 49382 | 0.68 | 0.999997 |
Target: 5'- cAGCCUccccUGGAgggUGGGCuugggCAGCCg -3' miRNA: 3'- uUCGGAu---ACCUa--ACCUG-----GUUGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 63510 | 0.68 | 0.999997 |
Target: 5'- cGGGCCUGUGGucagcaaGGCCAuCCc -3' miRNA: 3'- -UUCGGAUACCuaac---CUGGUuGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 3163 | 0.68 | 0.999997 |
Target: 5'- cGGGCUc--GGAgaaaugGGGCCGGCCa -3' miRNA: 3'- -UUCGGauaCCUaa----CCUGGUUGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 53618 | 0.68 | 0.999997 |
Target: 5'- -uGCCauccAUGGAguucUGGGCCAugCc -3' miRNA: 3'- uuCGGa---UACCUa---ACCUGGUugG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 371 | 0.68 | 0.999996 |
Target: 5'- -uGCCUAacaUGGAggauugaGGACCcACCu -3' miRNA: 3'- uuCGGAU---ACCUaa-----CCUGGuUGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 51064 | 0.68 | 0.999996 |
Target: 5'- gGAGCUccagGGAaucuUUGGGCCAugGCCu -3' miRNA: 3'- -UUCGGaua-CCU----AACCUGGU--UGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 51173 | 0.68 | 0.999996 |
Target: 5'- gGGGCCUG-GGAgagugaugGGGgCGGCCa -3' miRNA: 3'- -UUCGGAUaCCUaa------CCUgGUUGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 69100 | 0.68 | 0.999994 |
Target: 5'- -uGCCUGUGGccccGGCUGGCCa -3' miRNA: 3'- uuCGGAUACCuaacCUGGUUGG- -5' |
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33376 | 5' | -42.5 | NC_007605.1 | + | 64824 | 0.68 | 0.999994 |
Target: 5'- cGGCCUAcaUGGAgcccUGG-CaCAGCCa -3' miRNA: 3'- uUCGGAU--ACCUa---ACCuG-GUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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