miRNA display CGI


Results 21 - 40 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33376 5' -42.5 NC_007605.1 + 18685 0.67 1
Target:  5'- cGGCCUaggcccggggaaGUGGAgggGGAUCGcCCg -3'
miRNA:   3'- uUCGGA------------UACCUaa-CCUGGUuGG- -5'
33376 5' -42.5 NC_007605.1 + 18900 0.68 0.999998
Target:  5'- -cGCCUGgcgccuccucgGGGCCAGCCg -3'
miRNA:   3'- uuCGGAUaccuaa-----CCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 19031 0.7 0.999937
Target:  5'- gGGGCCUGUGGuggUGaGCCugcuGCCc -3'
miRNA:   3'- -UUCGGAUACCua-ACcUGGu---UGG- -5'
33376 5' -42.5 NC_007605.1 + 19529 0.66 1
Target:  5'- aGGGCCgGUGGGg-GGAUCcgGGCCa -3'
miRNA:   3'- -UUCGGaUACCUaaCCUGG--UUGG- -5'
33376 5' -42.5 NC_007605.1 + 20674 0.73 0.998944
Target:  5'- cAAGCCUAggGGAgaccgaagUgaaggcccUGGACCAACCc -3'
miRNA:   3'- -UUCGGAUa-CCU--------A--------ACCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 20897 0.67 0.999999
Target:  5'- gGGGCCcgggccGGGUUGGuCCAggGCCu -3'
miRNA:   3'- -UUCGGaua---CCUAACCuGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 21754 0.67 1
Target:  5'- cGGCCUaggcccggggaaGUGGAgggGGAUCGcCCg -3'
miRNA:   3'- uUCGGA------------UACCUaa-CCUGGUuGG- -5'
33376 5' -42.5 NC_007605.1 + 21968 0.68 0.999998
Target:  5'- -cGCCUGgcgccuccucgGGGCCAGCCg -3'
miRNA:   3'- uuCGGAUaccuaa-----CCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 22100 0.7 0.999937
Target:  5'- gGGGCCUGUGGuggUGaGCCugcuGCCc -3'
miRNA:   3'- -UUCGGAUACCua-ACcUGGu---UGG- -5'
33376 5' -42.5 NC_007605.1 + 22598 0.66 1
Target:  5'- aGGGCCgGUGGGg-GGAUCcgGGCCa -3'
miRNA:   3'- -UUCGGaUACCUaaCCUGG--UUGG- -5'
33376 5' -42.5 NC_007605.1 + 23743 0.73 0.998944
Target:  5'- cAAGCCUAggGGAgaccgaagUgaaggcccUGGACCAACCc -3'
miRNA:   3'- -UUCGGAUa-CCU--------A--------ACCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 23966 0.67 0.999999
Target:  5'- gGGGCCcgggccGGGUUGGuCCAggGCCu -3'
miRNA:   3'- -UUCGGaua---CCUAACCuGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 24823 0.67 1
Target:  5'- cGGCCUaggcccggggaaGUGGAgggGGAUCGcCCg -3'
miRNA:   3'- uUCGGA------------UACCUaa-CCUGGUuGG- -5'
33376 5' -42.5 NC_007605.1 + 25037 0.68 0.999998
Target:  5'- -cGCCUGgcgccuccucgGGGCCAGCCg -3'
miRNA:   3'- uuCGGAUaccuaa-----CCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 25168 0.7 0.999937
Target:  5'- gGGGCCUGUGGuggUGaGCCugcuGCCc -3'
miRNA:   3'- -UUCGGAUACCua-ACcUGGu---UGG- -5'
33376 5' -42.5 NC_007605.1 + 25667 0.66 1
Target:  5'- aGGGCCgGUGGGg-GGAUCcgGGCCa -3'
miRNA:   3'- -UUCGGaUACCUaaCCUGG--UUGG- -5'
33376 5' -42.5 NC_007605.1 + 26812 0.73 0.998944
Target:  5'- cAAGCCUAggGGAgaccgaagUgaaggcccUGGACCAACCc -3'
miRNA:   3'- -UUCGGAUa-CCU--------A--------ACCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 27035 0.67 0.999999
Target:  5'- gGGGCCcgggccGGGUUGGuCCAggGCCu -3'
miRNA:   3'- -UUCGGaua---CCUAACCuGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 27892 0.67 1
Target:  5'- cGGCCUaggcccggggaaGUGGAgggGGAUCGcCCg -3'
miRNA:   3'- uUCGGA------------UACCUaa-CCUGGUuGG- -5'
33376 5' -42.5 NC_007605.1 + 28106 0.68 0.999998
Target:  5'- -cGCCUGgcgccuccucgGGGCCAGCCg -3'
miRNA:   3'- uuCGGAUaccuaa-----CCUGGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.