miRNA display CGI


Results 21 - 40 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33376 5' -42.5 NC_007605.1 + 139930 0.66 1
Target:  5'- --cCCgg-GGAUcGGACUAGCCu -3'
miRNA:   3'- uucGGauaCCUAaCCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 137424 0.66 1
Target:  5'- uGGCCUuggGGGUggUGGGCUccuuagacugAGCCa -3'
miRNA:   3'- uUCGGAua-CCUA--ACCUGG----------UUGG- -5'
33376 5' -42.5 NC_007605.1 + 137282 0.74 0.997631
Target:  5'- -cGCCUcagGGAUcgUGGACuCGGCCa -3'
miRNA:   3'- uuCGGAua-CCUA--ACCUG-GUUGG- -5'
33376 5' -42.5 NC_007605.1 + 136852 0.68 0.999994
Target:  5'- gAGGCacggGUGGAgggGGGCCAaagagGCCc -3'
miRNA:   3'- -UUCGga--UACCUaa-CCUGGU-----UGG- -5'
33376 5' -42.5 NC_007605.1 + 136446 0.67 1
Target:  5'- uGGGUCUGUGGAggccgguggUGGGCUcugaaguGCCu -3'
miRNA:   3'- -UUCGGAUACCUa--------ACCUGGu------UGG- -5'
33376 5' -42.5 NC_007605.1 + 134530 0.66 1
Target:  5'- gAGGCCUggGGGUcugccgccaccgUGGGCCucacguagugGGCCc -3'
miRNA:   3'- -UUCGGAuaCCUA------------ACCUGG----------UUGG- -5'
33376 5' -42.5 NC_007605.1 + 133769 0.68 0.999998
Target:  5'- aGAGCUgcUGGAgcUGGGCCcggagAGCCu -3'
miRNA:   3'- -UUCGGauACCUa-ACCUGG-----UUGG- -5'
33376 5' -42.5 NC_007605.1 + 133496 0.69 0.999976
Target:  5'- -cGCCcucccGUGGAgggGGACCuGACCu -3'
miRNA:   3'- uuCGGa----UACCUaa-CCUGG-UUGG- -5'
33376 5' -42.5 NC_007605.1 + 132397 0.69 0.999988
Target:  5'- cAGCCgccGGGc-GGGCCGGCCu -3'
miRNA:   3'- uUCGGauaCCUaaCCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 132233 0.66 1
Target:  5'- gGGGCCaGUGGGU-GGGCaccugguagaGGCCg -3'
miRNA:   3'- -UUCGGaUACCUAaCCUGg---------UUGG- -5'
33376 5' -42.5 NC_007605.1 + 128217 0.71 0.999744
Target:  5'- cAAGUCc--GGAUUGGgcACCAGCCu -3'
miRNA:   3'- -UUCGGauaCCUAACC--UGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 127553 0.66 1
Target:  5'- uGGGgCUGUGGAUggugUGGAagaCAAUCu -3'
miRNA:   3'- -UUCgGAUACCUA----ACCUg--GUUGG- -5'
33376 5' -42.5 NC_007605.1 + 126442 0.73 0.998695
Target:  5'- cAGUCUAUucuuuacggacgGGGUggGGGCCAACCu -3'
miRNA:   3'- uUCGGAUA------------CCUAa-CCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 126273 0.66 1
Target:  5'- cGGGCCg--GGuccgGGcCCGACCu -3'
miRNA:   3'- -UUCGGauaCCuaa-CCuGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 124407 0.66 1
Target:  5'- aGAGCCaGUGGGggGGguguuuauugucACCGACa -3'
miRNA:   3'- -UUCGGaUACCUaaCC------------UGGUUGg -5'
33376 5' -42.5 NC_007605.1 + 124162 0.7 0.999954
Target:  5'- uGGCCgcagGGGUcgaGGAUCAGCCc -3'
miRNA:   3'- uUCGGaua-CCUAa--CCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 123568 0.67 0.999999
Target:  5'- -uGCCgg-GGAgaGGGCCAGgCa -3'
miRNA:   3'- uuCGGauaCCUaaCCUGGUUgG- -5'
33376 5' -42.5 NC_007605.1 + 122750 0.69 0.999988
Target:  5'- cGGCCUcgGGGU-GGACUuucagcacguGGCCc -3'
miRNA:   3'- uUCGGAuaCCUAaCCUGG----------UUGG- -5'
33376 5' -42.5 NC_007605.1 + 122712 0.68 0.999998
Target:  5'- uGGCCUAcaac--GGGCCAGCCu -3'
miRNA:   3'- uUCGGAUaccuaaCCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 122304 0.69 0.999988
Target:  5'- -cGCUUGUcggcgGGAUucgGGGCCAGCUg -3'
miRNA:   3'- uuCGGAUA-----CCUAa--CCUGGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.