miRNA display CGI


Results 41 - 60 of 190 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33376 5' -42.5 NC_007605.1 + 116801 0.69 0.999992
Target:  5'- uGGCCgggGUGGAaUGucaGACCAagGCCg -3'
miRNA:   3'- uUCGGa--UACCUaAC---CUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 114892 0.68 0.999998
Target:  5'- -uGCCUAUGGAUaGauaGCCAcCCg -3'
miRNA:   3'- uuCGGAUACCUAaCc--UGGUuGG- -5'
33376 5' -42.5 NC_007605.1 + 114293 0.72 0.999322
Target:  5'- -uGCCUGUGGAgauuaGGGgUAACCc -3'
miRNA:   3'- uuCGGAUACCUaa---CCUgGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 112085 0.66 1
Target:  5'- cAGGUUUG-GGAgUGGGCCAAUa -3'
miRNA:   3'- -UUCGGAUaCCUaACCUGGUUGg -5'
33376 5' -42.5 NC_007605.1 + 108530 0.67 0.999999
Target:  5'- -cGCCUAUGGAguuGACUcgucgucggcaaagaGACCa -3'
miRNA:   3'- uuCGGAUACCUaacCUGG---------------UUGG- -5'
33376 5' -42.5 NC_007605.1 + 107715 0.68 0.999998
Target:  5'- -uGCCgcaGGAagGaGGCCAGCCa -3'
miRNA:   3'- uuCGGauaCCUaaC-CUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 106403 0.69 0.999991
Target:  5'- aAAGCUgcucgggggaugAUGGGcgGGACCAACa -3'
miRNA:   3'- -UUCGGa-----------UACCUaaCCUGGUUGg -5'
33376 5' -42.5 NC_007605.1 + 104963 0.78 0.9604
Target:  5'- gAAGCCUcuccUGGAcccUGGACCAACUa -3'
miRNA:   3'- -UUCGGAu---ACCUa--ACCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 104453 0.71 0.999744
Target:  5'- uAGCCgggGUGGA--GGGCCGAUa -3'
miRNA:   3'- uUCGGa--UACCUaaCCUGGUUGg -5'
33376 5' -42.5 NC_007605.1 + 104119 0.71 0.999744
Target:  5'- gAGGCCUAUGGAg-GGGCUcuuGGCa -3'
miRNA:   3'- -UUCGGAUACCUaaCCUGG---UUGg -5'
33376 5' -42.5 NC_007605.1 + 102332 0.67 1
Target:  5'- cAGCUUcAUGGucgUGGACCAcgACUc -3'
miRNA:   3'- uUCGGA-UACCua-ACCUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 102227 0.68 0.999997
Target:  5'- uGAGCguuaUGUGGAcUGGAUCugcGCCa -3'
miRNA:   3'- -UUCGg---AUACCUaACCUGGu--UGG- -5'
33376 5' -42.5 NC_007605.1 + 96948 0.67 0.999999
Target:  5'- uGGCCUucuaccUGGAggGGGCCuGCg -3'
miRNA:   3'- uUCGGAu-----ACCUaaCCUGGuUGg -5'
33376 5' -42.5 NC_007605.1 + 94961 0.66 1
Target:  5'- aAAGCUcacgGcGAaacUUGGGCCAGCCc -3'
miRNA:   3'- -UUCGGaua-C-CU---AACCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 92505 0.67 1
Target:  5'- -uGCUg--GGcgUGGACCGcgcgGCCa -3'
miRNA:   3'- uuCGGauaCCuaACCUGGU----UGG- -5'
33376 5' -42.5 NC_007605.1 + 91632 0.69 0.999992
Target:  5'- cAGGCCcuuccauccacccGGAUccccgUGGGCCAACCg -3'
miRNA:   3'- -UUCGGaua----------CCUA-----ACCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 91382 0.66 1
Target:  5'- cAGGuCCUGUGGGggUGGgaGCCAaagaggcaggcagggGCCg -3'
miRNA:   3'- -UUC-GGAUACCUa-ACC--UGGU---------------UGG- -5'
33376 5' -42.5 NC_007605.1 + 91378 0.72 0.999577
Target:  5'- cAGCCauaUGUGGAcagaUGGACCugAGCCa -3'
miRNA:   3'- uUCGG---AUACCUa---ACCUGG--UUGG- -5'
33376 5' -42.5 NC_007605.1 + 88515 0.67 1
Target:  5'- gGAGCCUG-GG---GGGCCGGCg -3'
miRNA:   3'- -UUCGGAUaCCuaaCCUGGUUGg -5'
33376 5' -42.5 NC_007605.1 + 88342 0.7 0.999966
Target:  5'- --uUCUAUGGGcUGGGCCuuACCa -3'
miRNA:   3'- uucGGAUACCUaACCUGGu-UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.