miRNA display CGI


Results 61 - 80 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33376 5' -42.5 NC_007605.1 + 87730 0.67 0.999999
Target:  5'- uGAGuCCUucGGAUacUGGGCCuccuGCCg -3'
miRNA:   3'- -UUC-GGAuaCCUA--ACCUGGu---UGG- -5'
33376 5' -42.5 NC_007605.1 + 85103 0.68 0.999994
Target:  5'- uGGCCacUGGcgUGGGgCAGCUg -3'
miRNA:   3'- uUCGGauACCuaACCUgGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 84650 0.71 0.99985
Target:  5'- cGAGCC--UGGAcacucagUGGGCCGACg -3'
miRNA:   3'- -UUCGGauACCUa------ACCUGGUUGg -5'
33376 5' -42.5 NC_007605.1 + 83859 0.71 0.999804
Target:  5'- -uGCUaUAUGGAUUGGGCUgggcacgaaaAACCg -3'
miRNA:   3'- uuCGG-AUACCUAACCUGG----------UUGG- -5'
33376 5' -42.5 NC_007605.1 + 82743 0.74 0.997145
Target:  5'- gGGGCCUGaGGGcaGGGCCuGCCa -3'
miRNA:   3'- -UUCGGAUaCCUaaCCUGGuUGG- -5'
33376 5' -42.5 NC_007605.1 + 82577 0.66 1
Target:  5'- uGGCCUGUucaagaGGAggGuGGCCAggauGCCa -3'
miRNA:   3'- uUCGGAUA------CCUaaC-CUGGU----UGG- -5'
33376 5' -42.5 NC_007605.1 + 81556 0.71 0.99985
Target:  5'- gGGGCCUGUgcuaccGGAcacgGGGCCAuGCCg -3'
miRNA:   3'- -UUCGGAUA------CCUaa--CCUGGU-UGG- -5'
33376 5' -42.5 NC_007605.1 + 80470 0.72 0.999322
Target:  5'- uGGCCUAUGGGUU--ACCAGgCa -3'
miRNA:   3'- uUCGGAUACCUAAccUGGUUgG- -5'
33376 5' -42.5 NC_007605.1 + 75790 0.68 0.999998
Target:  5'- cAGCCagGUGGAUuuugagcuccgaUGGACgCAGCg -3'
miRNA:   3'- uUCGGa-UACCUA------------ACCUG-GUUGg -5'
33376 5' -42.5 NC_007605.1 + 75724 0.75 0.994305
Target:  5'- -cGCCgggGUGGggUGGACguCAGCCu -3'
miRNA:   3'- uuCGGa--UACCuaACCUG--GUUGG- -5'
33376 5' -42.5 NC_007605.1 + 75528 0.69 0.999988
Target:  5'- cGAGCCUggccAUGGGUgauagUGGGCUGAgCg -3'
miRNA:   3'- -UUCGGA----UACCUA-----ACCUGGUUgG- -5'
33376 5' -42.5 NC_007605.1 + 74679 0.66 1
Target:  5'- cGAGCCgagAUaGAUcUGGGCCuGCCc -3'
miRNA:   3'- -UUCGGa--UAcCUA-ACCUGGuUGG- -5'
33376 5' -42.5 NC_007605.1 + 72024 0.68 0.999999
Target:  5'- -cGCCaGUGGccgGGGCCGuggaGCCg -3'
miRNA:   3'- uuCGGaUACCuaaCCUGGU----UGG- -5'
33376 5' -42.5 NC_007605.1 + 71601 0.68 0.999994
Target:  5'- aGGGCCgugcaggUAUGGcgUGGGCCGGa- -3'
miRNA:   3'- -UUCGG-------AUACCuaACCUGGUUgg -5'
33376 5' -42.5 NC_007605.1 + 69100 0.68 0.999994
Target:  5'- -uGCCUGUGGccccGGCUGGCCa -3'
miRNA:   3'- uuCGGAUACCuaacCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 67877 0.66 1
Target:  5'- -uGCCUGcguUGGccacgGcGGCCAGCCg -3'
miRNA:   3'- uuCGGAU---ACCuaa--C-CUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 65545 0.66 1
Target:  5'- aGAGUCgagGGA--GGGCCAGCa -3'
miRNA:   3'- -UUCGGauaCCUaaCCUGGUUGg -5'
33376 5' -42.5 NC_007605.1 + 65519 0.79 0.956249
Target:  5'- uGGGCCUcgGGGUgcaGGGCCuGGCCg -3'
miRNA:   3'- -UUCGGAuaCCUAa--CCUGG-UUGG- -5'
33376 5' -42.5 NC_007605.1 + 64824 0.68 0.999994
Target:  5'- cGGCCUAcaUGGAgcccUGG-CaCAGCCa -3'
miRNA:   3'- uUCGGAU--ACCUa---ACCuG-GUUGG- -5'
33376 5' -42.5 NC_007605.1 + 64697 0.75 0.993926
Target:  5'- cGAGCCgggGUGGGUguaggggugacggGGGCUGGCCa -3'
miRNA:   3'- -UUCGGa--UACCUAa------------CCUGGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.