miRNA display CGI


Results 81 - 100 of 190 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33376 5' -42.5 NC_007605.1 + 64313 0.66 1
Target:  5'- cAGCCUcgGGGUcugaguUGG-CCuuGACCu -3'
miRNA:   3'- uUCGGAuaCCUA------ACCuGG--UUGG- -5'
33376 5' -42.5 NC_007605.1 + 63568 0.69 0.999985
Target:  5'- gAGGCCUuuGUGGAUcUGGACgCGuggcucuccggcggcGCCg -3'
miRNA:   3'- -UUCGGA--UACCUA-ACCUG-GU---------------UGG- -5'
33376 5' -42.5 NC_007605.1 + 63510 0.68 0.999997
Target:  5'- cGGGCCUGUGGucagcaaGGCCAuCCc -3'
miRNA:   3'- -UUCGGAUACCuaac---CUGGUuGG- -5'
33376 5' -42.5 NC_007605.1 + 63332 0.71 0.999804
Target:  5'- gGGGCCUGacgcGGA-UGG-CCAACCu -3'
miRNA:   3'- -UUCGGAUa---CCUaACCuGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 62902 0.66 1
Target:  5'- gGAGCUgg-GGAUcuuUGGAcugggggauuuggcCCAGCCg -3'
miRNA:   3'- -UUCGGauaCCUA---ACCU--------------GGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 62366 0.71 0.999804
Target:  5'- aAGGCaaagGUGGccGUUGGGCCAgagACCg -3'
miRNA:   3'- -UUCGga--UACC--UAACCUGGU---UGG- -5'
33376 5' -42.5 NC_007605.1 + 62326 0.69 0.999988
Target:  5'- gGAGCaCaGUGGGggcgGGGCCGGCg -3'
miRNA:   3'- -UUCG-GaUACCUaa--CCUGGUUGg -5'
33376 5' -42.5 NC_007605.1 + 61459 0.68 0.999999
Target:  5'- -cGCCUGUGGca-GGccCCGGCCc -3'
miRNA:   3'- uuCGGAUACCuaaCCu-GGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 61260 0.71 0.999744
Target:  5'- gGAGCCg--GGGccgGGGCCuGCCa -3'
miRNA:   3'- -UUCGGauaCCUaa-CCUGGuUGG- -5'
33376 5' -42.5 NC_007605.1 + 59717 0.72 0.999577
Target:  5'- aGGGCCggcacgaggugGUGGGUcUGGACCcgGGCCg -3'
miRNA:   3'- -UUCGGa----------UACCUA-ACCUGG--UUGG- -5'
33376 5' -42.5 NC_007605.1 + 59054 0.7 0.999915
Target:  5'- -uGCCUA-GGAUgcggaGGGCCgAGCCu -3'
miRNA:   3'- uuCGGAUaCCUAa----CCUGG-UUGG- -5'
33376 5' -42.5 NC_007605.1 + 58118 0.66 1
Target:  5'- gGGGCCgc-GGAggccgGGGCCGcagagGCCg -3'
miRNA:   3'- -UUCGGauaCCUaa---CCUGGU-----UGG- -5'
33376 5' -42.5 NC_007605.1 + 58088 0.66 1
Target:  5'- gGGGCCgc-GGAggccgGGGCCGcggagGCCg -3'
miRNA:   3'- -UUCGGauaCCUaa---CCUGGU-----UGG- -5'
33376 5' -42.5 NC_007605.1 + 58058 0.66 1
Target:  5'- gGGGCCgc-GGAggccgGGGCCGcggagGCCg -3'
miRNA:   3'- -UUCGGauaCCUaa---CCUGGU-----UGG- -5'
33376 5' -42.5 NC_007605.1 + 56997 0.68 0.999998
Target:  5'- gGGGCUaaUAaGGAguagGGACCGAUCg -3'
miRNA:   3'- -UUCGG--AUaCCUaa--CCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 55137 0.66 1
Target:  5'- cAGCUUAUGGA---GACCGGgCg -3'
miRNA:   3'- uUCGGAUACCUaacCUGGUUgG- -5'
33376 5' -42.5 NC_007605.1 + 54526 0.69 0.999992
Target:  5'- uAGCCgcggGGGUggcGGGCCAAgCg -3'
miRNA:   3'- uUCGGaua-CCUAa--CCUGGUUgG- -5'
33376 5' -42.5 NC_007605.1 + 53618 0.68 0.999997
Target:  5'- -uGCCauccAUGGAguucUGGGCCAugCc -3'
miRNA:   3'- uuCGGa---UACCUa---ACCUGGUugG- -5'
33376 5' -42.5 NC_007605.1 + 52507 0.7 0.999915
Target:  5'- cAGCCUGUaGGugaGGACCGAguCCg -3'
miRNA:   3'- uUCGGAUA-CCuaaCCUGGUU--GG- -5'
33376 5' -42.5 NC_007605.1 + 52390 0.8 0.918937
Target:  5'- gAAGCCgGUGGG-UGGACCGGCg -3'
miRNA:   3'- -UUCGGaUACCUaACCUGGUUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.