miRNA display CGI


Results 101 - 120 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33376 5' -42.5 NC_007605.1 + 52292 0.71 0.999804
Target:  5'- cGGGCCguacuuUGGuugUGGACCAGgCCc -3'
miRNA:   3'- -UUCGGau----ACCua-ACCUGGUU-GG- -5'
33376 5' -42.5 NC_007605.1 + 51673 0.67 1
Target:  5'- uGGCCacgGUGGg--GGGCCuGGCCu -3'
miRNA:   3'- uUCGGa--UACCuaaCCUGG-UUGG- -5'
33376 5' -42.5 NC_007605.1 + 51287 0.69 0.999976
Target:  5'- gGGGCuCUGUGGGcUGGGagGGCCa -3'
miRNA:   3'- -UUCG-GAUACCUaACCUggUUGG- -5'
33376 5' -42.5 NC_007605.1 + 51173 0.68 0.999996
Target:  5'- gGGGCCUG-GGAgagugaugGGGgCGGCCa -3'
miRNA:   3'- -UUCGGAUaCCUaa------CCUgGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 51064 0.68 0.999996
Target:  5'- gGAGCUccagGGAaucuUUGGGCCAugGCCu -3'
miRNA:   3'- -UUCGGaua-CCU----AACCUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 50568 0.66 1
Target:  5'- -uGCCUggGGGaUGGGaaAGCCg -3'
miRNA:   3'- uuCGGAuaCCUaACCUggUUGG- -5'
33376 5' -42.5 NC_007605.1 + 49648 0.67 1
Target:  5'- uGAGCCUGcUGGAcgGGgguggcggaugACCcGCCa -3'
miRNA:   3'- -UUCGGAU-ACCUaaCC-----------UGGuUGG- -5'
33376 5' -42.5 NC_007605.1 + 49382 0.68 0.999997
Target:  5'- cAGCCUccccUGGAgggUGGGCuugggCAGCCg -3'
miRNA:   3'- uUCGGAu---ACCUa--ACCUG-----GUUGG- -5'
33376 5' -42.5 NC_007605.1 + 48487 0.67 1
Target:  5'- gAGGCCUucuucUGGAggGaGGCCAauagaGCCg -3'
miRNA:   3'- -UUCGGAu----ACCUaaC-CUGGU-----UGG- -5'
33376 5' -42.5 NC_007605.1 + 48455 0.67 1
Target:  5'- gGAGCUcGUGGGggccgggGGGCCcuGCCu -3'
miRNA:   3'- -UUCGGaUACCUaa-----CCUGGu-UGG- -5'
33376 5' -42.5 NC_007605.1 + 48101 0.66 1
Target:  5'- uAGGCCUGUGGAgcgcuGCUuuGCCa -3'
miRNA:   3'- -UUCGGAUACCUaacc-UGGu-UGG- -5'
33376 5' -42.5 NC_007605.1 + 47598 0.69 0.999983
Target:  5'- cAGGCUccUGGAUcugGGGCUGGCCu -3'
miRNA:   3'- -UUCGGauACCUAa--CCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 45199 0.67 0.999999
Target:  5'- cAGCCUccggucuggugAUGGccaGGGCCAACUc -3'
miRNA:   3'- uUCGGA-----------UACCuaaCCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 44658 0.72 0.999463
Target:  5'- aAGGCC-GUGGAUgcgcaGGACCAcguCCa -3'
miRNA:   3'- -UUCGGaUACCUAa----CCUGGUu--GG- -5'
33376 5' -42.5 NC_007605.1 + 43990 0.68 0.999994
Target:  5'- uAAGCgUAgagaaggcUGGGUUGGGaaaguCCAGCCu -3'
miRNA:   3'- -UUCGgAU--------ACCUAACCU-----GGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 42350 0.69 0.999976
Target:  5'- uGGCCUggAUGGccUGGugCAugCa -3'
miRNA:   3'- uUCGGA--UACCuaACCugGUugG- -5'
33376 5' -42.5 NC_007605.1 + 41825 0.8 0.925172
Target:  5'- gGGGCCUGUGGAcaccugagGGAgCGGCCg -3'
miRNA:   3'- -UUCGGAUACCUaa------CCUgGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 40883 0.75 0.994305
Target:  5'- --cCCUAUGGAggGGACCcuCCu -3'
miRNA:   3'- uucGGAUACCUaaCCUGGuuGG- -5'
33376 5' -42.5 NC_007605.1 + 40412 0.71 0.999887
Target:  5'- uAGGCCUGUGccauggGGACCcccuGCCa -3'
miRNA:   3'- -UUCGGAUACcuaa--CCUGGu---UGG- -5'
33376 5' -42.5 NC_007605.1 + 40234 0.75 0.995169
Target:  5'- cAGGCCUAgGGGUccagGGGgCAGCCg -3'
miRNA:   3'- -UUCGGAUaCCUAa---CCUgGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.