miRNA display CGI


Results 81 - 100 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33376 5' -42.5 NC_007605.1 + 51287 0.69 0.999976
Target:  5'- gGGGCuCUGUGGGcUGGGagGGCCa -3'
miRNA:   3'- -UUCG-GAUACCUaACCUggUUGG- -5'
33376 5' -42.5 NC_007605.1 + 47598 0.69 0.999983
Target:  5'- cAGGCUccUGGAUcugGGGCUGGCCu -3'
miRNA:   3'- -UUCGGauACCUAa--CCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 63568 0.69 0.999985
Target:  5'- gAGGCCUuuGUGGAUcUGGACgCGuggcucuccggcggcGCCg -3'
miRNA:   3'- -UUCGGA--UACCUA-ACCUG-GU---------------UGG- -5'
33376 5' -42.5 NC_007605.1 + 122304 0.69 0.999988
Target:  5'- -cGCUUGUcggcgGGAUucgGGGCCAGCUg -3'
miRNA:   3'- uuCGGAUA-----CCUAa--CCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 132397 0.69 0.999988
Target:  5'- cAGCCgccGGGc-GGGCCGGCCu -3'
miRNA:   3'- uUCGGauaCCUaaCCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 54526 0.69 0.999992
Target:  5'- uAGCCgcggGGGUggcGGGCCAAgCg -3'
miRNA:   3'- uUCGGaua-CCUAa--CCUGGUUgG- -5'
33376 5' -42.5 NC_007605.1 + 3665 0.69 0.999992
Target:  5'- cAGCCcg-GGGUagguccccUGGACCuGCCg -3'
miRNA:   3'- uUCGGauaCCUA--------ACCUGGuUGG- -5'
33376 5' -42.5 NC_007605.1 + 59054 0.7 0.999915
Target:  5'- -uGCCUA-GGAUgcggaGGGCCgAGCCu -3'
miRNA:   3'- uuCGGAUaCCUAa----CCUGG-UUGG- -5'
33376 5' -42.5 NC_007605.1 + 52507 0.7 0.999915
Target:  5'- cAGCCUGUaGGugaGGACCGAguCCg -3'
miRNA:   3'- uUCGGAUA-CCuaaCCUGGUU--GG- -5'
33376 5' -42.5 NC_007605.1 + 62366 0.71 0.999804
Target:  5'- aAGGCaaagGUGGccGUUGGGCCAgagACCg -3'
miRNA:   3'- -UUCGga--UACC--UAACCUGGU---UGG- -5'
33376 5' -42.5 NC_007605.1 + 80470 0.72 0.999322
Target:  5'- uGGCCUAUGGGUU--ACCAGgCa -3'
miRNA:   3'- uUCGGAUACCUAAccUGGUUgG- -5'
33376 5' -42.5 NC_007605.1 + 44658 0.72 0.999463
Target:  5'- aAGGCC-GUGGAUgcgcaGGACCAcguCCa -3'
miRNA:   3'- -UUCGGaUACCUAa----CCUGGUu--GG- -5'
33376 5' -42.5 NC_007605.1 + 2934 0.72 0.999577
Target:  5'- cAGCC-AUGGAgcGGACUGACg -3'
miRNA:   3'- uUCGGaUACCUaaCCUGGUUGg -5'
33376 5' -42.5 NC_007605.1 + 59717 0.72 0.999577
Target:  5'- aGGGCCggcacgaggugGUGGGUcUGGACCcgGGCCg -3'
miRNA:   3'- -UUCGGa----------UACCUA-ACCUGG--UUGG- -5'
33376 5' -42.5 NC_007605.1 + 61260 0.71 0.999744
Target:  5'- gGAGCCg--GGGccgGGGCCuGCCa -3'
miRNA:   3'- -UUCGGauaCCUaa-CCUGGuUGG- -5'
33376 5' -42.5 NC_007605.1 + 104453 0.71 0.999744
Target:  5'- uAGCCgggGUGGA--GGGCCGAUa -3'
miRNA:   3'- uUCGGa--UACCUaaCCUGGUUGg -5'
33376 5' -42.5 NC_007605.1 + 52292 0.71 0.999804
Target:  5'- cGGGCCguacuuUGGuugUGGACCAGgCCc -3'
miRNA:   3'- -UUCGGau----ACCua-ACCUGGUU-GG- -5'
33376 5' -42.5 NC_007605.1 + 63332 0.71 0.999804
Target:  5'- gGGGCCUGacgcGGA-UGG-CCAACCu -3'
miRNA:   3'- -UUCGGAUa---CCUaACCuGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 83859 0.71 0.999804
Target:  5'- -uGCUaUAUGGAUUGGGCUgggcacgaaaAACCg -3'
miRNA:   3'- uuCGG-AUACCUAACCUGG----------UUGG- -5'
33376 5' -42.5 NC_007605.1 + 71601 0.68 0.999994
Target:  5'- aGGGCCgugcaggUAUGGcgUGGGCCGGa- -3'
miRNA:   3'- -UUCGG-------AUACCuaACCUGGUUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.