miRNA display CGI


Results 21 - 40 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33376 5' -42.5 NC_007605.1 + 19031 0.7 0.999937
Target:  5'- gGGGCCUGUGGuggUGaGCCugcuGCCc -3'
miRNA:   3'- -UUCGGAUACCua-ACcUGGu---UGG- -5'
33376 5' -42.5 NC_007605.1 + 28237 0.7 0.999937
Target:  5'- gGGGCCUGUGGuggUGaGCCugcuGCCc -3'
miRNA:   3'- -UUCGGAUACCua-ACcUGGu---UGG- -5'
33376 5' -42.5 NC_007605.1 + 104119 0.71 0.999744
Target:  5'- gAGGCCUAUGGAg-GGGCUcuuGGCa -3'
miRNA:   3'- -UUCGGAUACCUaaCCUGG---UUGg -5'
33376 5' -42.5 NC_007605.1 + 40883 0.75 0.994305
Target:  5'- --cCCUAUGGAggGGACCcuCCu -3'
miRNA:   3'- uucGGAUACCUaaCCUGGuuGG- -5'
33376 5' -42.5 NC_007605.1 + 106403 0.69 0.999991
Target:  5'- aAAGCUgcucgggggaugAUGGGcgGGACCAACa -3'
miRNA:   3'- -UUCGGa-----------UACCUaaCCUGGUUGg -5'
33376 5' -42.5 NC_007605.1 + 88342 0.7 0.999966
Target:  5'- --uUCUAUGGGcUGGGCCuuACCa -3'
miRNA:   3'- uucGGAUACCUaACCUGGu-UGG- -5'
33376 5' -42.5 NC_007605.1 + 34375 0.7 0.999937
Target:  5'- gGGGCCUGUGGuggUGaGCCugcuGCCc -3'
miRNA:   3'- -UUCGGAUACCua-ACcUGGu---UGG- -5'
33376 5' -42.5 NC_007605.1 + 143699 0.75 0.994305
Target:  5'- --cCCUAUGGAggGGACCcuCCu -3'
miRNA:   3'- uucGGAUACCUaaCCUGGuuGG- -5'
33376 5' -42.5 NC_007605.1 + 36860 0.7 0.999954
Target:  5'- gGGGacaUGUGGc-UGGACCAACCu -3'
miRNA:   3'- -UUCgg-AUACCuaACCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 104963 0.78 0.9604
Target:  5'- gAAGCCUcuccUGGAcccUGGACCAACUa -3'
miRNA:   3'- -UUCGGAu---ACCUa--ACCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 31306 0.7 0.999937
Target:  5'- gGGGCCUGUGGuggUGaGCCugcuGCCc -3'
miRNA:   3'- -UUCGGAUACCua-ACcUGGu---UGG- -5'
33376 5' -42.5 NC_007605.1 + 15962 0.7 0.999937
Target:  5'- gGGGCCUGUGGuggUGaGCCugcuGCCc -3'
miRNA:   3'- -UUCGGAUACCua-ACcUGGu---UGG- -5'
33376 5' -42.5 NC_007605.1 + 81556 0.71 0.99985
Target:  5'- gGGGCCUGUgcuaccGGAcacgGGGCCAuGCCg -3'
miRNA:   3'- -UUCGGAUA------CCUaa--CCUGGU-UGG- -5'
33376 5' -42.5 NC_007605.1 + 128217 0.71 0.999744
Target:  5'- cAAGUCc--GGAUUGGgcACCAGCCu -3'
miRNA:   3'- -UUCGGauaCCUAACC--UGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 114293 0.72 0.999322
Target:  5'- -uGCCUGUGGAgauuaGGGgUAACCc -3'
miRNA:   3'- uuCGGAUACCUaa---CCUgGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 75724 0.75 0.994305
Target:  5'- -cGCCgggGUGGggUGGACguCAGCCu -3'
miRNA:   3'- uuCGGa--UACCuaACCUG--GUUGG- -5'
33376 5' -42.5 NC_007605.1 + 136852 0.68 0.999994
Target:  5'- gAGGCacggGUGGAgggGGGCCAaagagGCCc -3'
miRNA:   3'- -UUCGga--UACCUaa-CCUGGU-----UGG- -5'
33376 5' -42.5 NC_007605.1 + 116801 0.69 0.999992
Target:  5'- uGGCCgggGUGGAaUGucaGACCAagGCCg -3'
miRNA:   3'- uUCGGa--UACCUaAC---CUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 161507 0.69 0.999988
Target:  5'- uGGGCCgg-GGcgUGGACaggAACCu -3'
miRNA:   3'- -UUCGGauaCCuaACCUGg--UUGG- -5'
33376 5' -42.5 NC_007605.1 + 144609 0.69 0.999976
Target:  5'- cAAGgCgg-GGGUUGGGCCcagGGCCa -3'
miRNA:   3'- -UUCgGauaCCUAACCUGG---UUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.