miRNA display CGI


Results 61 - 80 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33376 5' -42.5 NC_007605.1 + 116801 0.69 0.999992
Target:  5'- uGGCCgggGUGGAaUGucaGACCAagGCCg -3'
miRNA:   3'- uUCGGa--UACCUaAC---CUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 2899 0.68 0.999997
Target:  5'- aAGGCCUGuUGGcgccGGGCCGccGCCc -3'
miRNA:   3'- -UUCGGAU-ACCuaa-CCUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 82743 0.74 0.997145
Target:  5'- gGGGCCUGaGGGcaGGGCCuGCCa -3'
miRNA:   3'- -UUCGGAUaCCUaaCCUGGuUGG- -5'
33376 5' -42.5 NC_007605.1 + 91378 0.72 0.999577
Target:  5'- cAGCCauaUGUGGAcagaUGGACCugAGCCa -3'
miRNA:   3'- uUCGG---AUACCUa---ACCUGG--UUGG- -5'
33376 5' -42.5 NC_007605.1 + 151693 0.71 0.99985
Target:  5'- cAGGCCUggcggGUGGAgauagGGACCAGa- -3'
miRNA:   3'- -UUCGGA-----UACCUaa---CCUGGUUgg -5'
33376 5' -42.5 NC_007605.1 + 40412 0.71 0.999887
Target:  5'- uAGGCCUGUGccauggGGACCcccuGCCa -3'
miRNA:   3'- -UUCGGAUACcuaa--CCUGGu---UGG- -5'
33376 5' -42.5 NC_007605.1 + 25168 0.7 0.999937
Target:  5'- gGGGCCUGUGGuggUGaGCCugcuGCCc -3'
miRNA:   3'- -UUCGGAUACCua-ACcUGGu---UGG- -5'
33376 5' -42.5 NC_007605.1 + 15962 0.7 0.999937
Target:  5'- gGGGCCUGUGGuggUGaGCCugcuGCCc -3'
miRNA:   3'- -UUCGGAUACCua-ACcUGGu---UGG- -5'
33376 5' -42.5 NC_007605.1 + 88342 0.7 0.999966
Target:  5'- --uUCUAUGGGcUGGGCCuuACCa -3'
miRNA:   3'- uucGGAUACCUaACCUGGu-UGG- -5'
33376 5' -42.5 NC_007605.1 + 75528 0.69 0.999988
Target:  5'- cGAGCCUggccAUGGGUgauagUGGGCUGAgCg -3'
miRNA:   3'- -UUCGGA----UACCUA-----ACCUGGUUgG- -5'
33376 5' -42.5 NC_007605.1 + 64313 0.66 1
Target:  5'- cAGCCUcgGGGUcugaguUGG-CCuuGACCu -3'
miRNA:   3'- uUCGGAuaCCUA------ACCuGG--UUGG- -5'
33376 5' -42.5 NC_007605.1 + 2858 0.66 1
Target:  5'- gGGGCCgGUGGcggucUGGuaguACCAGCCc -3'
miRNA:   3'- -UUCGGaUACCua---ACC----UGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 107715 0.68 0.999998
Target:  5'- -uGCCgcaGGAagGaGGCCAGCCa -3'
miRNA:   3'- uuCGGauaCCUaaC-CUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 61459 0.68 0.999999
Target:  5'- -cGCCUGUGGca-GGccCCGGCCc -3'
miRNA:   3'- uuCGGAUACCuaaCCu-GGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 23966 0.67 0.999999
Target:  5'- gGGGCCcgggccGGGUUGGuCCAggGCCu -3'
miRNA:   3'- -UUCGGaua---CCUAACCuGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 14759 0.67 0.999999
Target:  5'- gGGGCCcgggccGGGUUGGuCCAggGCCu -3'
miRNA:   3'- -UUCGGaua---CCUAACCuGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 88515 0.67 1
Target:  5'- gGAGCCUG-GG---GGGCCGGCg -3'
miRNA:   3'- -UUCGGAUaCCuaaCCUGGUUGg -5'
33376 5' -42.5 NC_007605.1 + 102332 0.67 1
Target:  5'- cAGCUUcAUGGucgUGGACCAcgACUc -3'
miRNA:   3'- uUCGGA-UACCua-ACCUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 127553 0.66 1
Target:  5'- uGGGgCUGUGGAUggugUGGAagaCAAUCu -3'
miRNA:   3'- -UUCgGAUACCUA----ACCUg--GUUGG- -5'
33376 5' -42.5 NC_007605.1 + 62902 0.66 1
Target:  5'- gGAGCUgg-GGAUcuuUGGAcugggggauuuggcCCAGCCg -3'
miRNA:   3'- -UUCGGauaCCUA---ACCU--------------GGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.