miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33377 3' -52.4 NC_007605.1 + 125828 0.66 0.990407
Target:  5'- -gUGGAAcuuGAGUC-UGGCCUcccGCCCGc- -3'
miRNA:   3'- ggACCUU---CUUAGuACCGGA---UGGGCuc -5'
33377 3' -52.4 NC_007605.1 + 167022 0.66 0.988519
Target:  5'- uCCUGGAgcgugcuuugcuAGAGcagCAguccucugccugcGGCCUGCCCGGc -3'
miRNA:   3'- -GGACCU------------UCUUa--GUa------------CCGGAUGGGCUc -5'
33377 3' -52.4 NC_007605.1 + 103544 0.66 0.987779
Target:  5'- aCCggGGGAG-AUCAUGGCauccggcaagcaccaUcaGCCCGGGg -3'
miRNA:   3'- -GGa-CCUUCuUAGUACCGg--------------A--UGGGCUC- -5'
33377 3' -52.4 NC_007605.1 + 68578 0.66 0.986022
Target:  5'- aCUUGGGAGAGUCc-GGCaagGCCaGAGa -3'
miRNA:   3'- -GGACCUUCUUAGuaCCGga-UGGgCUC- -5'
33377 3' -52.4 NC_007605.1 + 5129 0.66 0.986022
Target:  5'- gCUGGggGugcaAGUUuUGGCUgGCCUGGGg -3'
miRNA:   3'- gGACCuuC----UUAGuACCGGaUGGGCUC- -5'
33377 3' -52.4 NC_007605.1 + 100829 0.66 0.986022
Target:  5'- cCCUGGucGGGcuUCcgGGCCUcacgGCCCa-- -3'
miRNA:   3'- -GGACCuuCUU--AGuaCCGGA----UGGGcuc -5'
33377 3' -52.4 NC_007605.1 + 114410 0.66 0.986022
Target:  5'- -aUGGAacccuAGccacCGUGGCCagGCCCGAGg -3'
miRNA:   3'- ggACCU-----UCuua-GUACCGGa-UGGGCUC- -5'
33377 3' -52.4 NC_007605.1 + 121934 0.66 0.984262
Target:  5'- cCCUGGguGGAUCuUGaGCUUgGCCUGGGc -3'
miRNA:   3'- -GGACCuuCUUAGuAC-CGGA-UGGGCUC- -5'
33377 3' -52.4 NC_007605.1 + 166627 0.66 0.984262
Target:  5'- --cGGAgaguagcguAGAAUCcagccaGUGGUCUACCCGGu -3'
miRNA:   3'- ggaCCU---------UCUUAG------UACCGGAUGGGCUc -5'
33377 3' -52.4 NC_007605.1 + 160596 0.66 0.982339
Target:  5'- --gGGAAGGAggAUGGCCUccaGCUCGGc -3'
miRNA:   3'- ggaCCUUCUUagUACCGGA---UGGGCUc -5'
33377 3' -52.4 NC_007605.1 + 82292 0.66 0.982339
Target:  5'- -aUGGAGGGGcCGUGGg-UACCCGAGc -3'
miRNA:   3'- ggACCUUCUUaGUACCggAUGGGCUC- -5'
33377 3' -52.4 NC_007605.1 + 22420 0.67 0.981103
Target:  5'- cUCUGGGgccgcccgggcugccGGggUCccuccggcUGGCCUgggACCCGGGg -3'
miRNA:   3'- -GGACCU---------------UCuuAGu-------ACCGGA---UGGGCUC- -5'
33377 3' -52.4 NC_007605.1 + 34696 0.67 0.981103
Target:  5'- cUCUGGGgccgcccgggcugccGGggUCccuccggcUGGCCUgggACCCGGGg -3'
miRNA:   3'- -GGACCU---------------UCuuAGu-------ACCGGA---UGGGCUC- -5'
33377 3' -52.4 NC_007605.1 + 19351 0.67 0.981103
Target:  5'- cUCUGGGgccgcccgggcugccGGggUCccuccggcUGGCCUgggACCCGGGg -3'
miRNA:   3'- -GGACCU---------------UCuuAGu-------ACCGGA---UGGGCUC- -5'
33377 3' -52.4 NC_007605.1 + 31627 0.67 0.981103
Target:  5'- cUCUGGGgccgcccgggcugccGGggUCccuccggcUGGCCUgggACCCGGGg -3'
miRNA:   3'- -GGACCU---------------UCuuAGu-------ACCGGA---UGGGCUC- -5'
33377 3' -52.4 NC_007605.1 + 25489 0.67 0.981103
Target:  5'- cUCUGGGgccgcccgggcugccGGggUCccuccggcUGGCCUgggACCCGGGg -3'
miRNA:   3'- -GGACCU---------------UCuuAGu-------ACCGGA---UGGGCUC- -5'
33377 3' -52.4 NC_007605.1 + 28558 0.67 0.981103
Target:  5'- cUCUGGGgccgcccgggcugccGGggUCccuccggcUGGCCUgggACCCGGGg -3'
miRNA:   3'- -GGACCU---------------UCuuAGu-------ACCGGA---UGGGCUC- -5'
33377 3' -52.4 NC_007605.1 + 16282 0.67 0.981103
Target:  5'- cUCUGGGgccgcccgggcugccGGggUCccuccggcUGGCCUgggACCCGGGg -3'
miRNA:   3'- -GGACCU---------------UCuuAGu-------ACCGGA---UGGGCUC- -5'
33377 3' -52.4 NC_007605.1 + 13213 0.67 0.981103
Target:  5'- cUCUGGGgccgcccgggcugccGGggUCccuccggcUGGCCUgggACCCGGGg -3'
miRNA:   3'- -GGACCU---------------UCuuAGu-------ACCGGA---UGGGCUC- -5'
33377 3' -52.4 NC_007605.1 + 126275 0.67 0.980243
Target:  5'- uCCgGGccGggUCcgGGCCcgACCUGAc -3'
miRNA:   3'- -GGaCCuuCuuAGuaCCGGa-UGGGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.