miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33377 5' -52.5 NC_007605.1 + 129415 0.66 0.986815
Target:  5'- --aUUGGGgAGGUUuUGCGggggCUAGCCc -3'
miRNA:   3'- cagAACCCaUCCGGuAUGCa---GAUCGG- -5'
33377 5' -52.5 NC_007605.1 + 125320 0.66 0.985118
Target:  5'- ---gUGGGUGGGCU--GCGguugCaGGCCa -3'
miRNA:   3'- cagaACCCAUCCGGuaUGCa---GaUCGG- -5'
33377 5' -52.5 NC_007605.1 + 119131 0.66 0.979023
Target:  5'- uGUCUUugaugGGGUGGGCCccgaGUUUGGUa -3'
miRNA:   3'- -CAGAA-----CCCAUCCGGuaugCAGAUCGg -5'
33377 5' -52.5 NC_007605.1 + 171055 0.66 0.979023
Target:  5'- aUCgggGGGUGGGgCAUGgGg--GGCCg -3'
miRNA:   3'- cAGaa-CCCAUCCgGUAUgCagaUCGG- -5'
33377 5' -52.5 NC_007605.1 + 169995 0.66 0.979023
Target:  5'- aUCgggGGGUGGGgCAUGgGg--GGCCg -3'
miRNA:   3'- cAGaa-CCCAUCCgGUAUgCagaUCGG- -5'
33377 5' -52.5 NC_007605.1 + 135737 0.67 0.974039
Target:  5'- -cCUUGGGUGGGgCGUccggGCG-CUccacgaAGCCg -3'
miRNA:   3'- caGAACCCAUCCgGUA----UGCaGA------UCGG- -5'
33377 5' -52.5 NC_007605.1 + 45947 0.67 0.971247
Target:  5'- aGUggUGGGUAGGCUAUGCcuUCUuccgcguuGGCUg -3'
miRNA:   3'- -CAgaACCCAUCCGGUAUGc-AGA--------UCGG- -5'
33377 5' -52.5 NC_007605.1 + 12198 0.67 0.971247
Target:  5'- ----aGGGccuuagAGGCCcagGCGUCUGGCa -3'
miRNA:   3'- cagaaCCCa-----UCCGGua-UGCAGAUCGg -5'
33377 5' -52.5 NC_007605.1 + 62818 0.67 0.96503
Target:  5'- cUCUgccagGGGU-GGCUggGCGUCU-GCCc -3'
miRNA:   3'- cAGAa----CCCAuCCGGuaUGCAGAuCGG- -5'
33377 5' -52.5 NC_007605.1 + 98566 0.68 0.949889
Target:  5'- ---cUGGG-AGGCCcacGCGUCUagacAGCCg -3'
miRNA:   3'- cagaACCCaUCCGGua-UGCAGA----UCGG- -5'
33377 5' -52.5 NC_007605.1 + 106054 0.69 0.936026
Target:  5'- cUCUUGGaGUAuGGCCGgggGCGggcUCUAcGCCu -3'
miRNA:   3'- cAGAACC-CAU-CCGGUa--UGC---AGAU-CGG- -5'
33377 5' -52.5 NC_007605.1 + 15267 0.69 0.914081
Target:  5'- ----aGGGccuuagAGGCCAagGCGUCUGGCa -3'
miRNA:   3'- cagaaCCCa-----UCCGGUa-UGCAGAUCGg -5'
33377 5' -52.5 NC_007605.1 + 18336 0.69 0.914081
Target:  5'- ----aGGGccuuagAGGCCAagGCGUCUGGCa -3'
miRNA:   3'- cagaaCCCa-----UCCGGUa-UGCAGAUCGg -5'
33377 5' -52.5 NC_007605.1 + 21405 0.69 0.914081
Target:  5'- ----aGGGccuuagAGGCCAagGCGUCUGGCa -3'
miRNA:   3'- cagaaCCCa-----UCCGGUa-UGCAGAUCGg -5'
33377 5' -52.5 NC_007605.1 + 24474 0.69 0.914081
Target:  5'- ----aGGGccuuagAGGCCAagGCGUCUGGCa -3'
miRNA:   3'- cagaaCCCa-----UCCGGUa-UGCAGAUCGg -5'
33377 5' -52.5 NC_007605.1 + 27543 0.69 0.914081
Target:  5'- ----aGGGccuuagAGGCCAagGCGUCUGGCa -3'
miRNA:   3'- cagaaCCCa-----UCCGGUa-UGCAGAUCGg -5'
33377 5' -52.5 NC_007605.1 + 33681 0.69 0.914081
Target:  5'- ----aGGGccuuagAGGCCAagGCGUCUGGCa -3'
miRNA:   3'- cagaaCCCa-----UCCGGUa-UGCAGAUCGg -5'
33377 5' -52.5 NC_007605.1 + 30612 0.69 0.914081
Target:  5'- ----aGGGccuuagAGGCCAagGCGUCUGGCa -3'
miRNA:   3'- cagaaCCCa-----UCCGGUa-UGCAGAUCGg -5'
33377 5' -52.5 NC_007605.1 + 54531 0.7 0.901624
Target:  5'- -gCggGGGUggcGGGCCAaGCGUCcagucUGGCCa -3'
miRNA:   3'- caGaaCCCA---UCCGGUaUGCAG-----AUCGG- -5'
33377 5' -52.5 NC_007605.1 + 149044 0.7 0.897698
Target:  5'- gGUCUccGGcGUagaugaaaaaggccuGGGCCAUGC-UCUGGCCg -3'
miRNA:   3'- -CAGAa-CC-CA---------------UCCGGUAUGcAGAUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.