miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33379 5' -39.8 NC_007605.1 + 157000 0.67 1
Target:  5'- -gGUGUGGuGGAGUGuUGGGCUUa -3'
miRNA:   3'- gaCAUAUC-CUUCAC-GCUUGAAc -5'
33379 5' -39.8 NC_007605.1 + 141656 0.67 1
Target:  5'- -gGUGUGGuGGAGUGuUGGGCUUa -3'
miRNA:   3'- gaCAUAUC-CUUCAC-GCUUGAAc -5'
33379 5' -39.8 NC_007605.1 + 138587 0.67 1
Target:  5'- -gGUGUGGuGGAGUGuUGGGCUUa -3'
miRNA:   3'- gaCAUAUC-CUUCAC-GCUUGAAc -5'
33379 5' -39.8 NC_007605.1 + 147793 0.67 1
Target:  5'- -gGUGUGGuGGAGUGuUGGGCUUa -3'
miRNA:   3'- gaCAUAUC-CUUCAC-GCUUGAAc -5'
33379 5' -39.8 NC_007605.1 + 150862 0.67 1
Target:  5'- -gGUGUGGuGGAGUGuUGGGCUUa -3'
miRNA:   3'- gaCAUAUC-CUUCAC-GCUUGAAc -5'
33379 5' -39.8 NC_007605.1 + 153931 0.67 1
Target:  5'- -gGUGUGGuGGAGUGuUGGGCUUa -3'
miRNA:   3'- gaCAUAUC-CUUCAC-GCUUGAAc -5'
33379 5' -39.8 NC_007605.1 + 169413 0.66 1
Target:  5'- -gGUGUGGGcuGUGCGAGu--- -3'
miRNA:   3'- gaCAUAUCCuuCACGCUUgaac -5'
33379 5' -39.8 NC_007605.1 + 114843 0.66 1
Target:  5'- ---aGUAGGAGGUGgGAAUa-- -3'
miRNA:   3'- gacaUAUCCUUCACgCUUGaac -5'
33379 5' -39.8 NC_007605.1 + 167238 0.69 1
Target:  5'- gUGUGUAGGAGGgGUGggUUc- -3'
miRNA:   3'- gACAUAUCCUUCaCGCuuGAac -5'
33379 5' -39.8 NC_007605.1 + 144724 0.67 1
Target:  5'- -gGUGUGGuGGAGUGuUGGGCUUa -3'
miRNA:   3'- gaCAUAUC-CUUCAC-GCUUGAAc -5'
33379 5' -39.8 NC_007605.1 + 43025 0.66 1
Target:  5'- -aGUGUGGGAAGaUGgGAAUa-- -3'
miRNA:   3'- gaCAUAUCCUUC-ACgCUUGaac -5'
33379 5' -39.8 NC_007605.1 + 137590 0.66 1
Target:  5'- -gGUGUGGGAgacuaauguGGUGgGGGCUa- -3'
miRNA:   3'- gaCAUAUCCU---------UCACgCUUGAac -5'
33379 5' -39.8 NC_007605.1 + 147246 0.66 1
Target:  5'- -gGUAaGGGGgcuGGUGCGGACg-- -3'
miRNA:   3'- gaCAUaUCCU---UCACGCUUGaac -5'
33379 5' -39.8 NC_007605.1 + 133741 0.71 0.999999
Target:  5'- aUGcAUAGG-AGUGCGAACaUGg -3'
miRNA:   3'- gACaUAUCCuUCACGCUUGaAC- -5'
33379 5' -39.8 NC_007605.1 + 57786 0.71 0.999999
Target:  5'- aCUGgaggGGGAAG-GCGAGCUg- -3'
miRNA:   3'- -GACaua-UCCUUCaCGCUUGAac -5'
33379 5' -39.8 NC_007605.1 + 83566 0.71 0.999998
Target:  5'- -aGUGgcGGAcugcaGGUGUGAACUUGg -3'
miRNA:   3'- gaCAUauCCU-----UCACGCUUGAAC- -5'
33379 5' -39.8 NC_007605.1 + 39673 0.73 0.999988
Target:  5'- -----aAGGAGGUGCGGACUc- -3'
miRNA:   3'- gacauaUCCUUCACGCUUGAac -5'
33379 5' -39.8 NC_007605.1 + 41066 0.73 0.999967
Target:  5'- uUGcUAUGGGAGGUGgGGGCUg- -3'
miRNA:   3'- gAC-AUAUCCUUCACgCUUGAac -5'
33379 5' -39.8 NC_007605.1 + 158608 0.73 0.999967
Target:  5'- -gGUGgcGGGggGUGCGGGCUg- -3'
miRNA:   3'- gaCAUa-UCCuuCACGCUUGAac -5'
33379 5' -39.8 NC_007605.1 + 83448 0.76 0.999546
Target:  5'- gCUGUGUGGGcgacauggaacucAAGUGUGAACUUu -3'
miRNA:   3'- -GACAUAUCC-------------UUCACGCUUGAAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.