miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33380 3' -45.5 NC_007605.1 + 52481 0.66 0.999959
Target:  5'- cCCCUcccGGAgGCUGGACUccUGAc- -3'
miRNA:   3'- -GGGA---CCUgUGACCUGAu-ACUac -5'
33380 3' -45.5 NC_007605.1 + 15162 0.66 0.999959
Target:  5'- gUCCUGGugGCgGGG--GUGGUGa -3'
miRNA:   3'- -GGGACCugUGaCCUgaUACUAC- -5'
33380 3' -45.5 NC_007605.1 + 98048 0.66 0.999959
Target:  5'- cUCCUGGACAg-GGGCUuUGcgGa -3'
miRNA:   3'- -GGGACCUGUgaCCUGAuACuaC- -5'
33380 3' -45.5 NC_007605.1 + 57845 0.66 0.999944
Target:  5'- aUCCUGcGugGCUGGACg--GAg- -3'
miRNA:   3'- -GGGAC-CugUGACCUGauaCUac -5'
33380 3' -45.5 NC_007605.1 + 11346 0.66 0.999944
Target:  5'- gCCCUGGAUcuGCUGGGCc------ -3'
miRNA:   3'- -GGGACCUG--UGACCUGauacuac -5'
33380 3' -45.5 NC_007605.1 + 88489 0.66 0.999924
Target:  5'- cCCCUGGGCACcaUGGucucaagaucCUGUGcAUGg -3'
miRNA:   3'- -GGGACCUGUG--ACCu---------GAUAC-UAC- -5'
33380 3' -45.5 NC_007605.1 + 134661 0.66 0.999924
Target:  5'- uUCCU-GACGCUGGGCUAccUGGc- -3'
miRNA:   3'- -GGGAcCUGUGACCUGAU--ACUac -5'
33380 3' -45.5 NC_007605.1 + 55013 0.66 0.999924
Target:  5'- cUCCUGGAC-CUGGcCgg-GGUGg -3'
miRNA:   3'- -GGGACCUGuGACCuGauaCUAC- -5'
33380 3' -45.5 NC_007605.1 + 6284 0.66 0.999922
Target:  5'- gCCCUcGGGCaugagccACUGGACgugggGAUGg -3'
miRNA:   3'- -GGGA-CCUG-------UGACCUGaua--CUAC- -5'
33380 3' -45.5 NC_007605.1 + 10982 0.67 0.999899
Target:  5'- cCCCcGGAguCUGGACguggcugcgGUGGUGc -3'
miRNA:   3'- -GGGaCCUguGACCUGa--------UACUAC- -5'
33380 3' -45.5 NC_007605.1 + 161914 0.67 0.999899
Target:  5'- cUCCUGG-UAgUGGACU-UGAUGa -3'
miRNA:   3'- -GGGACCuGUgACCUGAuACUAC- -5'
33380 3' -45.5 NC_007605.1 + 40361 0.67 0.999867
Target:  5'- cCCCUGGAUugUuGGAUUuugcAUGAUc -3'
miRNA:   3'- -GGGACCUGugA-CCUGA----UACUAc -5'
33380 3' -45.5 NC_007605.1 + 84128 0.67 0.999826
Target:  5'- gUUUGGGCACUGGAggugguUGAUGg -3'
miRNA:   3'- gGGACCUGUGACCUgau---ACUAC- -5'
33380 3' -45.5 NC_007605.1 + 68940 0.67 0.999826
Target:  5'- cCUCUGGACGCUGGuacccgccaagcACgcgGUGAg- -3'
miRNA:   3'- -GGGACCUGUGACC------------UGa--UACUac -5'
33380 3' -45.5 NC_007605.1 + 129955 0.67 0.999774
Target:  5'- gCUUUGGGCACUGGuuaagGAUGg -3'
miRNA:   3'- -GGGACCUGUGACCugauaCUAC- -5'
33380 3' -45.5 NC_007605.1 + 122448 0.67 0.999708
Target:  5'- cCCCUGGAgGgUGGGCU-UGGg- -3'
miRNA:   3'- -GGGACCUgUgACCUGAuACUac -5'
33380 3' -45.5 NC_007605.1 + 832 0.67 0.999708
Target:  5'- uUCUGGACACaGGACUAa---- -3'
miRNA:   3'- gGGACCUGUGaCCUGAUacuac -5'
33380 3' -45.5 NC_007605.1 + 134553 0.68 0.999526
Target:  5'- cCCCUGGAgguggcugUGCUGGuGCUGcUGGUGg -3'
miRNA:   3'- -GGGACCU--------GUGACC-UGAU-ACUAC- -5'
33380 3' -45.5 NC_007605.1 + 63359 0.68 0.999252
Target:  5'- aCCUUGGccggugGCugUGGACUggGGUGc -3'
miRNA:   3'- -GGGACC------UGugACCUGAuaCUAC- -5'
33380 3' -45.5 NC_007605.1 + 115045 0.69 0.998247
Target:  5'- gCCCUGGGCACucagcucUGGAUaUGUGAc- -3'
miRNA:   3'- -GGGACCUGUG-------ACCUG-AUACUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.