miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33380 3' -45.5 NC_007605.1 + 46237 0.69 0.997916
Target:  5'- aCCCUGGGCACcgGGAg-GUGGg- -3'
miRNA:   3'- -GGGACCUGUGa-CCUgaUACUac -5'
33380 3' -45.5 NC_007605.1 + 146291 0.71 0.994108
Target:  5'- aUCCUGGAC-CUuGACUAUGAa- -3'
miRNA:   3'- -GGGACCUGuGAcCUGAUACUac -5'
33380 3' -45.5 NC_007605.1 + 99653 0.72 0.986017
Target:  5'- aCCCUGGGCcUUGG-CUAUGGUc -3'
miRNA:   3'- -GGGACCUGuGACCuGAUACUAc -5'
33380 3' -45.5 NC_007605.1 + 151704 0.73 0.974317
Target:  5'- cCCCUGGACAuCUGGACa------ -3'
miRNA:   3'- -GGGACCUGU-GACCUGauacuac -5'
33380 3' -45.5 NC_007605.1 + 157842 0.73 0.974317
Target:  5'- cCCCUGGACAuCUGGACa------ -3'
miRNA:   3'- -GGGACCUGU-GACCUGauacuac -5'
33380 3' -45.5 NC_007605.1 + 154773 0.73 0.974317
Target:  5'- cCCCUGGACAuCUGGACa------ -3'
miRNA:   3'- -GGGACCUGU-GACCUGauacuac -5'
33380 3' -45.5 NC_007605.1 + 148636 0.73 0.974317
Target:  5'- cCCCUGGACAuCUGGACa------ -3'
miRNA:   3'- -GGGACCUGU-GACCUGauacuac -5'
33380 3' -45.5 NC_007605.1 + 145567 0.73 0.974317
Target:  5'- cCCCUGGACAuCUGGACa------ -3'
miRNA:   3'- -GGGACCUGU-GACCUGauacuac -5'
33380 3' -45.5 NC_007605.1 + 142498 0.73 0.974317
Target:  5'- cCCCUGGACAuCUGGACa------ -3'
miRNA:   3'- -GGGACCUGU-GACCUGauacuac -5'
33380 3' -45.5 NC_007605.1 + 136360 0.73 0.974317
Target:  5'- cCCCUGGACAuCUGGACa------ -3'
miRNA:   3'- -GGGACCUGU-GACCUGauacuac -5'
33380 3' -45.5 NC_007605.1 + 139429 0.73 0.974317
Target:  5'- cCCCUGGACAuCUGGACa------ -3'
miRNA:   3'- -GGGACCUGU-GACCUGauacuac -5'
33380 3' -45.5 NC_007605.1 + 98665 0.74 0.960777
Target:  5'- cCCCUGGuCGCUGGAggaaauCUAUGAc- -3'
miRNA:   3'- -GGGACCuGUGACCU------GAUACUac -5'
33380 3' -45.5 NC_007605.1 + 58818 0.75 0.942961
Target:  5'- aUCUGGAC-CUGGACUggGGUGu -3'
miRNA:   3'- gGGACCUGuGACCUGAuaCUAC- -5'
33380 3' -45.5 NC_007605.1 + 145711 0.75 0.937798
Target:  5'- cCCCUGGACg--GGACUggGGUGg -3'
miRNA:   3'- -GGGACCUGugaCCUGAuaCUAC- -5'
33380 3' -45.5 NC_007605.1 + 148780 0.75 0.937798
Target:  5'- cCCCUGGACg--GGACUggGGUGg -3'
miRNA:   3'- -GGGACCUGugaCCUGAuaCUAC- -5'
33380 3' -45.5 NC_007605.1 + 151849 0.75 0.937798
Target:  5'- cCCCUGGACg--GGACUggGGUGg -3'
miRNA:   3'- -GGGACCUGugaCCUGAuaCUAC- -5'
33380 3' -45.5 NC_007605.1 + 154918 0.75 0.937798
Target:  5'- cCCCUGGACg--GGACUggGGUGg -3'
miRNA:   3'- -GGGACCUGugaCCUGAuaCUAC- -5'
33380 3' -45.5 NC_007605.1 + 157987 0.75 0.937798
Target:  5'- cCCCUGGACg--GGACUggGGUGg -3'
miRNA:   3'- -GGGACCUGugaCCUGAuaCUAC- -5'
33380 3' -45.5 NC_007605.1 + 136505 0.75 0.937798
Target:  5'- cCCCUGGACg--GGACUggGGUGg -3'
miRNA:   3'- -GGGACCUGugaCCUGAuaCUAC- -5'
33380 3' -45.5 NC_007605.1 + 139574 0.75 0.937798
Target:  5'- cCCCUGGACg--GGACUggGGUGg -3'
miRNA:   3'- -GGGACCUGugaCCUGAuaCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.