Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33380 | 3' | -45.5 | NC_007605.1 | + | 832 | 0.67 | 0.999708 |
Target: 5'- uUCUGGACACaGGACUAa---- -3' miRNA: 3'- gGGACCUGUGaCCUGAUacuac -5' |
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33380 | 3' | -45.5 | NC_007605.1 | + | 6284 | 0.66 | 0.999922 |
Target: 5'- gCCCUcGGGCaugagccACUGGACgugggGAUGg -3' miRNA: 3'- -GGGA-CCUG-------UGACCUGaua--CUAC- -5' |
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33380 | 3' | -45.5 | NC_007605.1 | + | 10982 | 0.67 | 0.999899 |
Target: 5'- cCCCcGGAguCUGGACguggcugcgGUGGUGc -3' miRNA: 3'- -GGGaCCUguGACCUGa--------UACUAC- -5' |
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33380 | 3' | -45.5 | NC_007605.1 | + | 11346 | 0.66 | 0.999944 |
Target: 5'- gCCCUGGAUcuGCUGGGCc------ -3' miRNA: 3'- -GGGACCUG--UGACCUGauacuac -5' |
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33380 | 3' | -45.5 | NC_007605.1 | + | 15162 | 0.66 | 0.999959 |
Target: 5'- gUCCUGGugGCgGGG--GUGGUGa -3' miRNA: 3'- -GGGACCugUGaCCUgaUACUAC- -5' |
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33380 | 3' | -45.5 | NC_007605.1 | + | 25302 | 1.05 | 0.044261 |
Target: 5'- uCCCUGGACACUGGACUAUGAUGc -3' miRNA: 3'- -GGGACCUGUGACCUGAUACUAC- -5' |
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33380 | 3' | -45.5 | NC_007605.1 | + | 40361 | 0.67 | 0.999867 |
Target: 5'- cCCCUGGAUugUuGGAUUuugcAUGAUc -3' miRNA: 3'- -GGGACCUGugA-CCUGA----UACUAc -5' |
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33380 | 3' | -45.5 | NC_007605.1 | + | 46237 | 0.69 | 0.997916 |
Target: 5'- aCCCUGGGCACcgGGAg-GUGGg- -3' miRNA: 3'- -GGGACCUGUGa-CCUgaUACUac -5' |
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33380 | 3' | -45.5 | NC_007605.1 | + | 52481 | 0.66 | 0.999959 |
Target: 5'- cCCCUcccGGAgGCUGGACUccUGAc- -3' miRNA: 3'- -GGGA---CCUgUGACCUGAu-ACUac -5' |
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33380 | 3' | -45.5 | NC_007605.1 | + | 53541 | 0.76 | 0.914241 |
Target: 5'- uCUCUGGACACUGGugUuuGUGGg- -3' miRNA: 3'- -GGGACCUGUGACCugA--UACUac -5' |
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33380 | 3' | -45.5 | NC_007605.1 | + | 55013 | 0.66 | 0.999924 |
Target: 5'- cUCCUGGAC-CUGGcCgg-GGUGg -3' miRNA: 3'- -GGGACCUGuGACCuGauaCUAC- -5' |
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33380 | 3' | -45.5 | NC_007605.1 | + | 57845 | 0.66 | 0.999944 |
Target: 5'- aUCCUGcGugGCUGGACg--GAg- -3' miRNA: 3'- -GGGAC-CugUGACCUGauaCUac -5' |
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33380 | 3' | -45.5 | NC_007605.1 | + | 58818 | 0.75 | 0.942961 |
Target: 5'- aUCUGGAC-CUGGACUggGGUGu -3' miRNA: 3'- gGGACCUGuGACCUGAuaCUAC- -5' |
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33380 | 3' | -45.5 | NC_007605.1 | + | 63359 | 0.68 | 0.999252 |
Target: 5'- aCCUUGGccggugGCugUGGACUggGGUGc -3' miRNA: 3'- -GGGACC------UGugACCUGAuaCUAC- -5' |
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33380 | 3' | -45.5 | NC_007605.1 | + | 68940 | 0.67 | 0.999826 |
Target: 5'- cCUCUGGACGCUGGuacccgccaagcACgcgGUGAg- -3' miRNA: 3'- -GGGACCUGUGACC------------UGa--UACUac -5' |
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33380 | 3' | -45.5 | NC_007605.1 | + | 72896 | 0.79 | 0.787604 |
Target: 5'- gCCCUGGACACUGGACc------ -3' miRNA: 3'- -GGGACCUGUGACCUGauacuac -5' |
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33380 | 3' | -45.5 | NC_007605.1 | + | 84128 | 0.67 | 0.999826 |
Target: 5'- gUUUGGGCACUGGAggugguUGAUGg -3' miRNA: 3'- gGGACCUGUGACCUgau---ACUAC- -5' |
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33380 | 3' | -45.5 | NC_007605.1 | + | 88489 | 0.66 | 0.999924 |
Target: 5'- cCCCUGGGCACcaUGGucucaagaucCUGUGcAUGg -3' miRNA: 3'- -GGGACCUGUG--ACCu---------GAUAC-UAC- -5' |
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33380 | 3' | -45.5 | NC_007605.1 | + | 98048 | 0.66 | 0.999959 |
Target: 5'- cUCCUGGACAg-GGGCUuUGcgGa -3' miRNA: 3'- -GGGACCUGUgaCCUGAuACuaC- -5' |
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33380 | 3' | -45.5 | NC_007605.1 | + | 98665 | 0.74 | 0.960777 |
Target: 5'- cCCCUGGuCGCUGGAggaaauCUAUGAc- -3' miRNA: 3'- -GGGACCuGUGACCU------GAUACUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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