miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33381 3' -42.5 NC_007605.1 + 93075 0.66 1
Target:  5'- aCUACucCCCCAaGGAUgaacagcGUGACa -3'
miRNA:   3'- -GAUGcuGGGGUaUCUAa------CACUG- -5'
33381 3' -42.5 NC_007605.1 + 116372 0.66 1
Target:  5'- aUGCGGCCCCAUGuaGUUGccuguaagGGCg -3'
miRNA:   3'- gAUGCUGGGGUAUc-UAACa-------CUG- -5'
33381 3' -42.5 NC_007605.1 + 7357 0.66 1
Target:  5'- -cACGcCCCCuUGGGagGUGGCg -3'
miRNA:   3'- gaUGCuGGGGuAUCUaaCACUG- -5'
33381 3' -42.5 NC_007605.1 + 44175 0.66 1
Target:  5'- ---aGACCCCAgagucAGGcUGUGGCc -3'
miRNA:   3'- gaugCUGGGGUa----UCUaACACUG- -5'
33381 3' -42.5 NC_007605.1 + 87468 0.67 1
Target:  5'- --cCGACCCCGguggAGAUgccaaugGUGAUu -3'
miRNA:   3'- gauGCUGGGGUa---UCUAa------CACUG- -5'
33381 3' -42.5 NC_007605.1 + 101164 0.67 1
Target:  5'- aUGCGGCCCCGgcGGUagaGUGGg -3'
miRNA:   3'- gAUGCUGGGGUauCUAa--CACUg -5'
33381 3' -42.5 NC_007605.1 + 94068 0.67 1
Target:  5'- ---aGACCCCcgGGGgugGUGAUg -3'
miRNA:   3'- gaugCUGGGGuaUCUaa-CACUG- -5'
33381 3' -42.5 NC_007605.1 + 3103 0.67 1
Target:  5'- -aAUGGCCCCAacauuaugAGAUaGUGGCc -3'
miRNA:   3'- gaUGCUGGGGUa-------UCUAaCACUG- -5'
33381 3' -42.5 NC_007605.1 + 108977 0.66 1
Target:  5'- aCUGCucACCCCGgguGAacaUUGUGACg -3'
miRNA:   3'- -GAUGc-UGGGGUau-CU---AACACUG- -5'
33381 3' -42.5 NC_007605.1 + 107136 0.66 1
Target:  5'- -gGCGGCUCCAgaUAGAgcGUGGg -3'
miRNA:   3'- gaUGCUGGGGU--AUCUaaCACUg -5'
33381 3' -42.5 NC_007605.1 + 124138 0.66 1
Target:  5'- -gAgGGCCCCAUAaucuGGUUGUcGGCc -3'
miRNA:   3'- gaUgCUGGGGUAU----CUAACA-CUG- -5'
33381 3' -42.5 NC_007605.1 + 135528 0.67 0.999999
Target:  5'- uCUGCGGCUUCGUGGAgcgcccgGACg -3'
miRNA:   3'- -GAUGCUGGGGUAUCUaaca---CUG- -5'
33381 3' -42.5 NC_007605.1 + 110549 0.67 0.999999
Target:  5'- --cUGACCCCucGGcgUGUGGCc -3'
miRNA:   3'- gauGCUGGGGuaUCuaACACUG- -5'
33381 3' -42.5 NC_007605.1 + 125903 0.67 0.999999
Target:  5'- -gGCGGCCCuCGUccugaucucccGGAgUGUGGCa -3'
miRNA:   3'- gaUGCUGGG-GUA-----------UCUaACACUG- -5'
33381 3' -42.5 NC_007605.1 + 37276 0.68 0.999996
Target:  5'- -gAUGACCCC-UGGAg-GUGGCu -3'
miRNA:   3'- gaUGCUGGGGuAUCUaaCACUG- -5'
33381 3' -42.5 NC_007605.1 + 118742 0.69 0.999992
Target:  5'- -gACGGCCUCGgcggGGAacGUGACa -3'
miRNA:   3'- gaUGCUGGGGUa---UCUaaCACUG- -5'
33381 3' -42.5 NC_007605.1 + 57997 0.69 0.999988
Target:  5'- -gGgGACCCCG-GGggUGUGACc -3'
miRNA:   3'- gaUgCUGGGGUaUCuaACACUG- -5'
33381 3' -42.5 NC_007605.1 + 149567 0.69 0.999988
Target:  5'- -cAUGACCCUAUuGGAUgaUGUGAUu -3'
miRNA:   3'- gaUGCUGGGGUA-UCUA--ACACUG- -5'
33381 3' -42.5 NC_007605.1 + 111053 0.69 0.999983
Target:  5'- -cACGAgCUCAUGGugUGUGACa -3'
miRNA:   3'- gaUGCUgGGGUAUCuaACACUG- -5'
33381 3' -42.5 NC_007605.1 + 133 0.69 0.999976
Target:  5'- -cACGGCCUCAguUAGuaccGUUGUGACc -3'
miRNA:   3'- gaUGCUGGGGU--AUC----UAACACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.