Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33381 | 3' | -42.5 | NC_007605.1 | + | 133 | 0.69 | 0.999976 |
Target: 5'- -cACGGCCUCAguUAGuaccGUUGUGACc -3' miRNA: 3'- gaUGCUGGGGU--AUC----UAACACUG- -5' |
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33381 | 3' | -42.5 | NC_007605.1 | + | 116030 | 0.72 | 0.999662 |
Target: 5'- -cAgGGCCCCGUAGAcagucuuUUGUGAg -3' miRNA: 3'- gaUgCUGGGGUAUCU-------AACACUg -5' |
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33381 | 3' | -42.5 | NC_007605.1 | + | 155061 | 0.72 | 0.999577 |
Target: 5'- -gGCGACCCCAU-GAUgcgGGCa -3' miRNA: 3'- gaUGCUGGGGUAuCUAacaCUG- -5' |
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33381 | 3' | -42.5 | NC_007605.1 | + | 155201 | 0.72 | 0.999322 |
Target: 5'- ---aGACCUCAgcguggAGAUUGUGACc -3' miRNA: 3'- gaugCUGGGGUa-----UCUAACACUG- -5' |
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33381 | 3' | -42.5 | NC_007605.1 | + | 63069 | 0.72 | 0.999322 |
Target: 5'- gCUGCuGGCCCCGgGGGagGUGGCg -3' miRNA: 3'- -GAUG-CUGGGGUaUCUaaCACUG- -5' |
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33381 | 3' | -42.5 | NC_007605.1 | + | 50841 | 0.75 | 0.99332 |
Target: 5'- gCUGCGACCCCGUGcgcccgugGUGGCc -3' miRNA: 3'- -GAUGCUGGGGUAUcuaa----CACUG- -5' |
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33381 | 3' | -42.5 | NC_007605.1 | + | 41722 | 0.75 | 0.99332 |
Target: 5'- aUGCGACCCuCAUAGAgUUGUGuuuCa -3' miRNA: 3'- gAUGCUGGG-GUAUCU-AACACu--G- -5' |
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33381 | 3' | -42.5 | NC_007605.1 | + | 146854 | 1.08 | 0.056664 |
Target: 5'- uCUACGACCCCAUAGAUUGUGACa -3' miRNA: 3'- -GAUGCUGGGGUAUCUAACACUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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