miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33381 5' -39.7 NC_007605.1 + 61851 0.68 1
Target:  5'- aUG-ACcgAGUCUGGGAcGCCGUAa -3'
miRNA:   3'- gACaUG--UUAGAUCCUuUGGCAU- -5'
33381 5' -39.7 NC_007605.1 + 3560 0.69 1
Target:  5'- -aGUugAGUCcaccgaGGGGAACCGUGg -3'
miRNA:   3'- gaCAugUUAGa-----UCCUUUGGCAU- -5'
33381 5' -39.7 NC_007605.1 + 93692 0.69 1
Target:  5'- -gGUGCAGaagCUGGGAGAUgGUGg -3'
miRNA:   3'- gaCAUGUUa--GAUCCUUUGgCAU- -5'
33381 5' -39.7 NC_007605.1 + 79118 0.68 1
Target:  5'- cCUGUACGuguuuuacUCUGGGAaugGACCGa- -3'
miRNA:   3'- -GACAUGUu-------AGAUCCU---UUGGCau -5'
33381 5' -39.7 NC_007605.1 + 61971 0.68 1
Target:  5'- gUGUGCAGgaggCggcGGGGAGCCGg- -3'
miRNA:   3'- gACAUGUUa---Ga--UCCUUUGGCau -5'
33381 5' -39.7 NC_007605.1 + 76495 0.68 1
Target:  5'- cCUGggcuuCAGUCaGGGAAGCCGc- -3'
miRNA:   3'- -GACau---GUUAGaUCCUUUGGCau -5'
33381 5' -39.7 NC_007605.1 + 88795 0.67 1
Target:  5'- aUGUGgGAaCUGGGAGACCu-- -3'
miRNA:   3'- gACAUgUUaGAUCCUUUGGcau -5'
33381 5' -39.7 NC_007605.1 + 159544 0.66 1
Target:  5'- cCUGUGCcugcgcGUCUGGGggGaCGUGg -3'
miRNA:   3'- -GACAUGu-----UAGAUCCuuUgGCAU- -5'
33381 5' -39.7 NC_007605.1 + 37193 0.66 1
Target:  5'- --aUACAGUC--GGGGACCGUGg -3'
miRNA:   3'- gacAUGUUAGauCCUUUGGCAU- -5'
33381 5' -39.7 NC_007605.1 + 84281 0.66 1
Target:  5'- uCUG-GCAGUCUAGGA-GCCu-- -3'
miRNA:   3'- -GACaUGUUAGAUCCUuUGGcau -5'
33381 5' -39.7 NC_007605.1 + 122815 0.66 1
Target:  5'- ---aAUAAUCUGGGggGCCc-- -3'
miRNA:   3'- gacaUGUUAGAUCCuuUGGcau -5'
33381 5' -39.7 NC_007605.1 + 99911 0.68 1
Target:  5'- gUGgagGCGuaGUCcAGGAGGCCGUGa -3'
miRNA:   3'- gACa--UGU--UAGaUCCUUUGGCAU- -5'
33381 5' -39.7 NC_007605.1 + 146658 0.67 1
Target:  5'- aCUGUcACAAUCUAuGGggUCGUAg -3'
miRNA:   3'- -GACA-UGUUAGAUcCUuuGGCAU- -5'
33381 5' -39.7 NC_007605.1 + 44569 0.66 1
Target:  5'- -cGUGCAuucacggcAUCUGGGGuGACCGg- -3'
miRNA:   3'- gaCAUGU--------UAGAUCCU-UUGGCau -5'
33381 5' -39.7 NC_007605.1 + 51376 0.66 1
Target:  5'- gCUGgagcCGGUCggAGGAGGCCGg- -3'
miRNA:   3'- -GACau--GUUAGa-UCCUUUGGCau -5'
33381 5' -39.7 NC_007605.1 + 164357 0.71 0.999999
Target:  5'- aUGUGgGA-CUGGGAGGCCGg- -3'
miRNA:   3'- gACAUgUUaGAUCCUUUGGCau -5'
33381 5' -39.7 NC_007605.1 + 170257 0.77 0.998019
Target:  5'- uCUGUGCGGgggggCUGGGggGCCGc- -3'
miRNA:   3'- -GACAUGUUa----GAUCCuuUGGCau -5'
33381 5' -39.7 NC_007605.1 + 171317 0.77 0.998019
Target:  5'- uCUGUGCGGgggggCUGGGggGCCGc- -3'
miRNA:   3'- -GACAUGUUa----GAUCCuuUGGCau -5'
33381 5' -39.7 NC_007605.1 + 170780 0.77 0.998019
Target:  5'- uCUGUGCGGgggggCUGGGggGCCGc- -3'
miRNA:   3'- -GACAUGUUa----GAUCCuuUGGCau -5'
33381 5' -39.7 NC_007605.1 + 169720 0.77 0.998019
Target:  5'- uCUGUGCGGgggggCUGGGggGCCGc- -3'
miRNA:   3'- -GACAUGUUa----GAUCCuuUGGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.