miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33382 3' -44.1 NC_007605.1 + 146753 0.66 0.999996
Target:  5'- cCUA-GGGACUCAUGuAGUGg-- -3'
miRNA:   3'- -GAUgCCCUGGGUACuUCACaau -5'
33382 3' -44.1 NC_007605.1 + 2483 0.66 0.999992
Target:  5'- -cACGGaGACCCuUGAcacauggaaGGUGUUGa -3'
miRNA:   3'- gaUGCC-CUGGGuACU---------UCACAAU- -5'
33382 3' -44.1 NC_007605.1 + 137444 0.67 0.999988
Target:  5'- uCUGgGGGGCCUGUGGuGGUGa-- -3'
miRNA:   3'- -GAUgCCCUGGGUACU-UCACaau -5'
33382 3' -44.1 NC_007605.1 + 140513 0.67 0.999988
Target:  5'- uCUGgGGGGCCUGUGGuGGUGa-- -3'
miRNA:   3'- -GAUgCCCUGGGUACU-UCACaau -5'
33382 3' -44.1 NC_007605.1 + 143582 0.67 0.999988
Target:  5'- uCUGgGGGGCCUGUGGuGGUGa-- -3'
miRNA:   3'- -GAUgCCCUGGGUACU-UCACaau -5'
33382 3' -44.1 NC_007605.1 + 146651 0.67 0.999988
Target:  5'- uCUGgGGGGCCUGUGGuGGUGa-- -3'
miRNA:   3'- -GAUgCCCUGGGUACU-UCACaau -5'
33382 3' -44.1 NC_007605.1 + 149719 0.67 0.999988
Target:  5'- uCUGgGGGGCCUGUGGuGGUGa-- -3'
miRNA:   3'- -GAUgCCCUGGGUACU-UCACaau -5'
33382 3' -44.1 NC_007605.1 + 152788 0.67 0.999988
Target:  5'- uCUGgGGGGCCUGUGGuGGUGa-- -3'
miRNA:   3'- -GAUgCCCUGGGUACU-UCACaau -5'
33382 3' -44.1 NC_007605.1 + 155857 0.67 0.999988
Target:  5'- uCUGgGGGGCCUGUGGuGGUGa-- -3'
miRNA:   3'- -GAUgCCCUGGGUACU-UCACaau -5'
33382 3' -44.1 NC_007605.1 + 158926 0.67 0.999988
Target:  5'- uCUGgGGGGCCUGUGGuGGUGa-- -3'
miRNA:   3'- -GAUgCCCUGGGUACU-UCACaau -5'
33382 3' -44.1 NC_007605.1 + 43760 0.67 0.999988
Target:  5'- --uUGGGGCUCcgGAGGUGggGg -3'
miRNA:   3'- gauGCCCUGGGuaCUUCACaaU- -5'
33382 3' -44.1 NC_007605.1 + 169932 0.67 0.999983
Target:  5'- ---aGGGGCCCGUG-GGUGa-- -3'
miRNA:   3'- gaugCCCUGGGUACuUCACaau -5'
33382 3' -44.1 NC_007605.1 + 171530 0.67 0.999983
Target:  5'- ---aGGGGCCCGUG-GGUGa-- -3'
miRNA:   3'- gaugCCCUGGGUACuUCACaau -5'
33382 3' -44.1 NC_007605.1 + 170992 0.67 0.999983
Target:  5'- ---aGGGGCCCGUG-GGUGa-- -3'
miRNA:   3'- gaugCCCUGGGUACuUCACaau -5'
33382 3' -44.1 NC_007605.1 + 170470 0.67 0.999983
Target:  5'- ---aGGGGCCCGUG-GGUGa-- -3'
miRNA:   3'- gaugCCCUGGGUACuUCACaau -5'
33382 3' -44.1 NC_007605.1 + 45467 0.67 0.999976
Target:  5'- --cCGGGcCCCcgGggGUGUc- -3'
miRNA:   3'- gauGCCCuGGGuaCuuCACAau -5'
33382 3' -44.1 NC_007605.1 + 167347 0.67 0.999967
Target:  5'- cCU-CGGGuGCCCGUGggGUcGUg- -3'
miRNA:   3'- -GAuGCCC-UGGGUACuuCA-CAau -5'
33382 3' -44.1 NC_007605.1 + 90286 0.68 0.999954
Target:  5'- -cACGGGGCC-AUGccGUGUUGu -3'
miRNA:   3'- gaUGCCCUGGgUACuuCACAAU- -5'
33382 3' -44.1 NC_007605.1 + 89237 0.68 0.999954
Target:  5'- --cCGGGAUgguuaagaCCAUGGAGUGUa- -3'
miRNA:   3'- gauGCCCUG--------GGUACUUCACAau -5'
33382 3' -44.1 NC_007605.1 + 71867 0.68 0.999889
Target:  5'- cCUGCGGGAUCCucguUGGAGg---- -3'
miRNA:   3'- -GAUGCCCUGGGu---ACUUCacaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.