miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33383 3' -42.8 NC_007605.1 + 89789 0.66 1
Target:  5'- aACGGCCc-CUCCAUuGGUUGcUGa -3'
miRNA:   3'- -UGUCGGuuGAGGUA-CCAAU-ACa -5'
33383 3' -42.8 NC_007605.1 + 150605 0.66 1
Target:  5'- aACAGCC--CUCCcgGGcgGUGg -3'
miRNA:   3'- -UGUCGGuuGAGGuaCCaaUACa -5'
33383 3' -42.8 NC_007605.1 + 89507 0.66 1
Target:  5'- aACGGCCc-CUCCAUcGGUUGcUGa -3'
miRNA:   3'- -UGUCGGuuGAGGUA-CCAAU-ACa -5'
33383 3' -42.8 NC_007605.1 + 50665 0.66 1
Target:  5'- cGCAGcCCGACggCCGUGGggaggcggGUGg -3'
miRNA:   3'- -UGUC-GGUUGa-GGUACCaa------UACa -5'
33383 3' -42.8 NC_007605.1 + 47354 0.66 1
Target:  5'- aGCGGCCGugUCCggGGa----- -3'
miRNA:   3'- -UGUCGGUugAGGuaCCaauaca -5'
33383 3' -42.8 NC_007605.1 + 62639 0.66 1
Target:  5'- gACAGCCuAGCUgCCAacagGGggGUGg -3'
miRNA:   3'- -UGUCGG-UUGA-GGUa---CCaaUACa -5'
33383 3' -42.8 NC_007605.1 + 99506 0.66 1
Target:  5'- -gGGCCAGCUCCAaGaaUGUGa -3'
miRNA:   3'- ugUCGGUUGAGGUaCcaAUACa -5'
33383 3' -42.8 NC_007605.1 + 118010 0.67 0.999999
Target:  5'- cAUGGCCcagAACUCCAUGG--AUGg -3'
miRNA:   3'- -UGUCGG---UUGAGGUACCaaUACa -5'
33383 3' -42.8 NC_007605.1 + 74628 0.67 0.999999
Target:  5'- uACAGCCAGCUCCcUGa------ -3'
miRNA:   3'- -UGUCGGUUGAGGuACcaauaca -5'
33383 3' -42.8 NC_007605.1 + 170232 0.67 0.999999
Target:  5'- cACAgcGCCGGCUaCCAUGGUg---- -3'
miRNA:   3'- -UGU--CGGUUGA-GGUACCAauaca -5'
33383 3' -42.8 NC_007605.1 + 113538 0.67 0.999999
Target:  5'- cGCAGCaGGgUCCAaGGUUGUGc -3'
miRNA:   3'- -UGUCGgUUgAGGUaCCAAUACa -5'
33383 3' -42.8 NC_007605.1 + 97874 0.67 0.999997
Target:  5'- -gGGCCAuCUCCGUGaGUUGUu- -3'
miRNA:   3'- ugUCGGUuGAGGUAC-CAAUAca -5'
33383 3' -42.8 NC_007605.1 + 91604 0.67 0.999997
Target:  5'- -gGGCCGGCUCCA-GGUg--Gg -3'
miRNA:   3'- ugUCGGUUGAGGUaCCAauaCa -5'
33383 3' -42.8 NC_007605.1 + 37083 0.67 0.999997
Target:  5'- cACAGCCAcCUCCAggGGUc---- -3'
miRNA:   3'- -UGUCGGUuGAGGUa-CCAauaca -5'
33383 3' -42.8 NC_007605.1 + 140704 0.67 0.999996
Target:  5'- uGCAGCCGGgUCCG-GGUUccGg -3'
miRNA:   3'- -UGUCGGUUgAGGUaCCAAuaCa -5'
33383 3' -42.8 NC_007605.1 + 118407 0.68 0.999987
Target:  5'- cCAGUgAAUgucaCCGUGGUUGUGUu -3'
miRNA:   3'- uGUCGgUUGa---GGUACCAAUACA- -5'
33383 3' -42.8 NC_007605.1 + 72222 0.68 0.999981
Target:  5'- gACAuGCaGACUCCA-GGUUAUGa -3'
miRNA:   3'- -UGU-CGgUUGAGGUaCCAAUACa -5'
33383 3' -42.8 NC_007605.1 + 112814 0.69 0.99995
Target:  5'- gACGuGcCCAGCUCCGUGGUccUGa -3'
miRNA:   3'- -UGU-C-GGUUGAGGUACCAauACa -5'
33383 3' -42.8 NC_007605.1 + 162535 0.7 0.999837
Target:  5'- gACAGCC-GCUCCAgcaGGUUcUGg -3'
miRNA:   3'- -UGUCGGuUGAGGUa--CCAAuACa -5'
33383 3' -42.8 NC_007605.1 + 141926 0.7 0.999786
Target:  5'- uGCAGCCGGgUCCggGGUUccGg -3'
miRNA:   3'- -UGUCGGUUgAGGuaCCAAuaCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.