miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33385 3' -44.8 NC_007605.1 + 84382 0.66 0.999995
Target:  5'- aGAGCCACGCCugaaucccAGGCccCCACAGuGGu -3'
miRNA:   3'- -UUUGGUGUGG--------UUUGu-GGUGUC-CU- -5'
33385 3' -44.8 NC_007605.1 + 168326 0.66 0.999995
Target:  5'- cAugCGCGuCCGAGCGCUugGaGGAc -3'
miRNA:   3'- uUugGUGU-GGUUUGUGGugU-CCU- -5'
33385 3' -44.8 NC_007605.1 + 35313 0.66 0.999995
Target:  5'- --cCCGCggcgGCCGAACcuCCGCAGGc -3'
miRNA:   3'- uuuGGUG----UGGUUUGu-GGUGUCCu -5'
33385 3' -44.8 NC_007605.1 + 94029 0.66 0.999995
Target:  5'- --cCCGC-CCAGGCACCAcCAGc- -3'
miRNA:   3'- uuuGGUGuGGUUUGUGGU-GUCcu -5'
33385 3' -44.8 NC_007605.1 + 92618 0.66 0.999995
Target:  5'- uGGCCAC-CCcAAUACCugguACAGGGu -3'
miRNA:   3'- uUUGGUGuGGuUUGUGG----UGUCCU- -5'
33385 3' -44.8 NC_007605.1 + 162431 0.66 0.999995
Target:  5'- gAGGCUACACCAAcgucaAUCAgAGGGg -3'
miRNA:   3'- -UUUGGUGUGGUUug---UGGUgUCCU- -5'
33385 3' -44.8 NC_007605.1 + 14256 0.66 0.999995
Target:  5'- -cACCACACCGgugccccccacGGCcCC-CGGGAa -3'
miRNA:   3'- uuUGGUGUGGU-----------UUGuGGuGUCCU- -5'
33385 3' -44.8 NC_007605.1 + 21020 0.66 0.999995
Target:  5'- cGGGCCGC-CCAc-CGCC-CGGGAg -3'
miRNA:   3'- -UUUGGUGuGGUuuGUGGuGUCCU- -5'
33385 3' -44.8 NC_007605.1 + 156461 0.66 0.999993
Target:  5'- uAACCAggauCACCAccccCGCCACcAGGAc -3'
miRNA:   3'- uUUGGU----GUGGUuu--GUGGUG-UCCU- -5'
33385 3' -44.8 NC_007605.1 + 105338 0.66 0.999993
Target:  5'- --uCCGcCAUCAGGCGuucCCACGGGGg -3'
miRNA:   3'- uuuGGU-GUGGUUUGU---GGUGUCCU- -5'
33385 3' -44.8 NC_007605.1 + 56584 0.66 0.999993
Target:  5'- cGGACCGCguccuucgugGCCAGGgACgGCAGGc -3'
miRNA:   3'- -UUUGGUG----------UGGUUUgUGgUGUCCu -5'
33385 3' -44.8 NC_007605.1 + 151005 0.66 0.999993
Target:  5'- -uACCACGCCAcggggggcgGGC-CCGCAuagGGAa -3'
miRNA:   3'- uuUGGUGUGGU---------UUGuGGUGU---CCU- -5'
33385 3' -44.8 NC_007605.1 + 6927 0.66 0.999993
Target:  5'- uGggUCGCGCCcu-CGCCGCcGGAc -3'
miRNA:   3'- -UuuGGUGUGGuuuGUGGUGuCCU- -5'
33385 3' -44.8 NC_007605.1 + 91409 0.66 0.999993
Target:  5'- -cAUCACACaCuuAgGCCAUAGGGa -3'
miRNA:   3'- uuUGGUGUG-GuuUgUGGUGUCCU- -5'
33385 3' -44.8 NC_007605.1 + 2326 0.66 0.999993
Target:  5'- uGGCCGgGCCAGAgACCGCuGa- -3'
miRNA:   3'- uUUGGUgUGGUUUgUGGUGuCcu -5'
33385 3' -44.8 NC_007605.1 + 538 0.66 0.999993
Target:  5'- aAGGCCACGCCcccucCACUuuuucCAGGAa -3'
miRNA:   3'- -UUUGGUGUGGuuu--GUGGu----GUCCU- -5'
33385 3' -44.8 NC_007605.1 + 2135 0.66 0.999993
Target:  5'- aAGGCCACGCCcccucCACUuuuucCAGGAa -3'
miRNA:   3'- -UUUGGUGUGGuuu--GUGGu----GUCCU- -5'
33385 3' -44.8 NC_007605.1 + 126431 0.66 0.999993
Target:  5'- uGGCCAuCACCAGACcggaggcuggcgACCauucGCAGGGc -3'
miRNA:   3'- uUUGGU-GUGGUUUG------------UGG----UGUCCU- -5'
33385 3' -44.8 NC_007605.1 + 68456 0.66 0.999993
Target:  5'- uGACCagACACCcuGGCACC-CAGGc -3'
miRNA:   3'- uUUGG--UGUGGu-UUGUGGuGUCCu -5'
33385 3' -44.8 NC_007605.1 + 1075 0.66 0.999993
Target:  5'- aAGGCCACGCCcccucCACUuuuucCAGGAa -3'
miRNA:   3'- -UUUGGUGUGGuuu--GUGGu----GUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.