miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33385 3' -44.8 NC_007605.1 + 105578 0.66 0.999989
Target:  5'- uGACCGCGCgucGAgGCC-CAGGAg -3'
miRNA:   3'- uUUGGUGUGgu-UUgUGGuGUCCU- -5'
33385 3' -44.8 NC_007605.1 + 64883 0.66 0.999979
Target:  5'- aGAACCACGagaggugcCCGGGCAUCuuuACGGGGc -3'
miRNA:   3'- -UUUGGUGU--------GGUUUGUGG---UGUCCU- -5'
33385 3' -44.8 NC_007605.1 + 100041 0.66 0.999979
Target:  5'- cGGCCACAuCCAGGCAUUGCcuGAa -3'
miRNA:   3'- uUUGGUGU-GGUUUGUGGUGucCU- -5'
33385 3' -44.8 NC_007605.1 + 54620 0.66 0.999989
Target:  5'- -cGCCGCACCAccaucgucCACgaGCAGGGa -3'
miRNA:   3'- uuUGGUGUGGUuu------GUGg-UGUCCU- -5'
33385 3' -44.8 NC_007605.1 + 80861 0.66 0.999989
Target:  5'- -cACCACuaguauCCAAACACCgu-GGAu -3'
miRNA:   3'- uuUGGUGu-----GGUUUGUGGuguCCU- -5'
33385 3' -44.8 NC_007605.1 + 98319 0.66 0.999989
Target:  5'- --uCUACGCgGAGCugCACcGGAg -3'
miRNA:   3'- uuuGGUGUGgUUUGugGUGuCCU- -5'
33385 3' -44.8 NC_007605.1 + 151005 0.66 0.999993
Target:  5'- -uACCACGCCAcggggggcgGGC-CCGCAuagGGAa -3'
miRNA:   3'- uuUGGUGUGGU---------UUGuGGUGU---CCU- -5'
33385 3' -44.8 NC_007605.1 + 156461 0.66 0.999993
Target:  5'- uAACCAggauCACCAccccCGCCACcAGGAc -3'
miRNA:   3'- uUUGGU----GUGGUuu--GUGGUG-UCCU- -5'
33385 3' -44.8 NC_007605.1 + 159719 0.66 0.999985
Target:  5'- aGAGCCGCuCC-GugGCCcCGGGAg -3'
miRNA:   3'- -UUUGGUGuGGuUugUGGuGUCCU- -5'
33385 3' -44.8 NC_007605.1 + 80508 0.66 0.999985
Target:  5'- cAGCUACACCGAuCACCAgAcGAc -3'
miRNA:   3'- uUUGGUGUGGUUuGUGGUgUcCU- -5'
33385 3' -44.8 NC_007605.1 + 84382 0.66 0.999995
Target:  5'- aGAGCCACGCCugaaucccAGGCccCCACAGuGGu -3'
miRNA:   3'- -UUUGGUGUGG--------UUUGu-GGUGUC-CU- -5'
33385 3' -44.8 NC_007605.1 + 56584 0.66 0.999993
Target:  5'- cGGACCGCguccuucgugGCCAGGgACgGCAGGc -3'
miRNA:   3'- -UUUGGUG----------UGGUUUgUGgUGUCCu -5'
33385 3' -44.8 NC_007605.1 + 2326 0.66 0.999993
Target:  5'- uGGCCGgGCCAGAgACCGCuGa- -3'
miRNA:   3'- uUUGGUgUGGUUUgUGGUGuCcu -5'
33385 3' -44.8 NC_007605.1 + 129443 0.66 0.999989
Target:  5'- gAGGCCACugUAAACcccgGCCuuGGGGu -3'
miRNA:   3'- -UUUGGUGugGUUUG----UGGugUCCU- -5'
33385 3' -44.8 NC_007605.1 + 134806 0.66 0.999985
Target:  5'- aAGGCCGUGCCAGGcCGCCAugcuCAGGGc -3'
miRNA:   3'- -UUUGGUGUGGUUU-GUGGU----GUCCU- -5'
33385 3' -44.8 NC_007605.1 + 85103 0.66 0.999979
Target:  5'- -uACCAUGCUguuGCGCCAguGGGc -3'
miRNA:   3'- uuUGGUGUGGuu-UGUGGUguCCU- -5'
33385 3' -44.8 NC_007605.1 + 92618 0.66 0.999995
Target:  5'- uGGCCAC-CCcAAUACCugguACAGGGu -3'
miRNA:   3'- uUUGGUGuGGuUUGUGG----UGUCCU- -5'
33385 3' -44.8 NC_007605.1 + 105338 0.66 0.999993
Target:  5'- --uCCGcCAUCAGGCGuucCCACGGGGg -3'
miRNA:   3'- uuuGGU-GUGGUUUGU---GGUGUCCU- -5'
33385 3' -44.8 NC_007605.1 + 110721 0.66 0.999985
Target:  5'- -cAUCAUGCCAGugGCCAUAauccuGGAg -3'
miRNA:   3'- uuUGGUGUGGUUugUGGUGU-----CCU- -5'
33385 3' -44.8 NC_007605.1 + 92889 0.66 0.999985
Target:  5'- uGGugCAUcuACUGAACACCAuCGGGGu -3'
miRNA:   3'- -UUugGUG--UGGUUUGUGGU-GUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.