miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33385 3' -44.8 NC_007605.1 + 23842 1.06 0.042695
Target:  5'- aAAACCACACCAAACACCACAGGAc -3'
miRNA:   3'- -UUUGGUGUGGUUUGUGGUGUCCU- -5'
33385 3' -44.8 NC_007605.1 + 15618 0.83 0.646055
Target:  5'- --uCCagACACCAGGCGCCGCAGGGg -3'
miRNA:   3'- uuuGG--UGUGGUUUGUGGUGUCCU- -5'
33385 3' -44.8 NC_007605.1 + 114606 0.8 0.80755
Target:  5'- -cAUCACACUGGACACCGcCAGGAg -3'
miRNA:   3'- uuUGGUGUGGUUUGUGGU-GUCCU- -5'
33385 3' -44.8 NC_007605.1 + 104321 0.79 0.844917
Target:  5'- gGAGCCugACCAAuguCACC-CAGGAu -3'
miRNA:   3'- -UUUGGugUGGUUu--GUGGuGUCCU- -5'
33385 3' -44.8 NC_007605.1 + 115949 0.79 0.844917
Target:  5'- gAAGCCACGCCAccgcuggccGACACCGCGGc- -3'
miRNA:   3'- -UUUGGUGUGGU---------UUGUGGUGUCcu -5'
33385 3' -44.8 NC_007605.1 + 109451 0.79 0.870499
Target:  5'- -cACCGCagGCCAAAgGCCACAGGu -3'
miRNA:   3'- uuUGGUG--UGGUUUgUGGUGUCCu -5'
33385 3' -44.8 NC_007605.1 + 86302 0.77 0.914445
Target:  5'- -cAUCACACCAuAUACCGCAaGGAa -3'
miRNA:   3'- uuUGGUGUGGUuUGUGGUGU-CCU- -5'
33385 3' -44.8 NC_007605.1 + 94196 0.75 0.956512
Target:  5'- aAGGCCAauucuacCACCGGuggaaagcACACCACAGGAc -3'
miRNA:   3'- -UUUGGU-------GUGGUU--------UGUGGUGUCCU- -5'
33385 3' -44.8 NC_007605.1 + 108663 0.75 0.956512
Target:  5'- aGGACCACgggugucACCAGcacCGCCACGGGAa -3'
miRNA:   3'- -UUUGGUG-------UGGUUu--GUGGUGUCCU- -5'
33385 3' -44.8 NC_007605.1 + 63987 0.75 0.960962
Target:  5'- uGGCCACAUUGAugGCCACAGuGGu -3'
miRNA:   3'- uUUGGUGUGGUUugUGGUGUC-CU- -5'
33385 3' -44.8 NC_007605.1 + 136546 0.75 0.960962
Target:  5'- -uACUACGCCGGGC-CCGCGGGc -3'
miRNA:   3'- uuUGGUGUGGUUUGuGGUGUCCu -5'
33385 3' -44.8 NC_007605.1 + 150767 0.75 0.960962
Target:  5'- gAGGCCGCGCCAGAgcagaGCC-CGGGAc -3'
miRNA:   3'- -UUUGGUGUGGUUUg----UGGuGUCCU- -5'
33385 3' -44.8 NC_007605.1 + 121223 0.75 0.968226
Target:  5'- cAGGCCcguGCCAAAgGCCACGGGGg -3'
miRNA:   3'- -UUUGGug-UGGUUUgUGGUGUCCU- -5'
33385 3' -44.8 NC_007605.1 + 106340 0.75 0.968226
Target:  5'- -cGCCAgaggcgcauuCACCAGGCAgCGCGGGAg -3'
miRNA:   3'- uuUGGU----------GUGGUUUGUgGUGUCCU- -5'
33385 3' -44.8 NC_007605.1 + 68625 0.75 0.968226
Target:  5'- cAGCCACuCCAgcAACACCGCAcuGGAg -3'
miRNA:   3'- uUUGGUGuGGU--UUGUGGUGU--CCU- -5'
33385 3' -44.8 NC_007605.1 + 25252 0.75 0.971473
Target:  5'- uGGCCACACUAAACACacaaACGGaGAu -3'
miRNA:   3'- uUUGGUGUGGUUUGUGg---UGUC-CU- -5'
33385 3' -44.8 NC_007605.1 + 6724 0.74 0.977239
Target:  5'- cGGCCACACaGGAgGCCaACAGGAg -3'
miRNA:   3'- uUUGGUGUGgUUUgUGG-UGUCCU- -5'
33385 3' -44.8 NC_007605.1 + 161942 0.74 0.982098
Target:  5'- aAAGCaGCACCAGGCACUGCAGa- -3'
miRNA:   3'- -UUUGgUGUGGUUUGUGGUGUCcu -5'
33385 3' -44.8 NC_007605.1 + 100619 0.73 0.986133
Target:  5'- --cCCAgACaCGAGCugCGCAGGAg -3'
miRNA:   3'- uuuGGUgUG-GUUUGugGUGUCCU- -5'
33385 3' -44.8 NC_007605.1 + 40288 0.73 0.987869
Target:  5'- aGGACCGCgGCCGAGcCACCAgGGGc -3'
miRNA:   3'- -UUUGGUG-UGGUUU-GUGGUgUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.