miRNA display CGI


Results 21 - 40 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33385 3' -44.8 NC_007605.1 + 1075 0.66 0.999993
Target:  5'- aAGGCCACGCCcccucCACUuuuucCAGGAa -3'
miRNA:   3'- -UUUGGUGUGGuuu--GUGGu----GUCCU- -5'
33385 3' -44.8 NC_007605.1 + 155649 0.66 0.999993
Target:  5'- --uCCACGuCCAGAC-CCugAGGc -3'
miRNA:   3'- uuuGGUGU-GGUUUGuGGugUCCu -5'
33385 3' -44.8 NC_007605.1 + 538 0.66 0.999993
Target:  5'- aAGGCCACGCCcccucCACUuuuucCAGGAa -3'
miRNA:   3'- -UUUGGUGUGGuuu--GUGGu----GUCCU- -5'
33385 3' -44.8 NC_007605.1 + 65828 0.66 0.999993
Target:  5'- -uGCUACGCCA---ACCACAGaGGc -3'
miRNA:   3'- uuUGGUGUGGUuugUGGUGUC-CU- -5'
33385 3' -44.8 NC_007605.1 + 48390 0.66 0.999992
Target:  5'- uGGAUCAgGCCGuuauugaGACugUGCAGGAu -3'
miRNA:   3'- -UUUGGUgUGGU-------UUGugGUGUCCU- -5'
33385 3' -44.8 NC_007605.1 + 17622 0.66 0.999992
Target:  5'- --uCCAuCGCCGagacgguGACGCUGCAGGGc -3'
miRNA:   3'- uuuGGU-GUGGU-------UUGUGGUGUCCU- -5'
33385 3' -44.8 NC_007605.1 + 98319 0.66 0.999989
Target:  5'- --uCUACGCgGAGCugCACcGGAg -3'
miRNA:   3'- uuuGGUGUGgUUUGugGUGuCCU- -5'
33385 3' -44.8 NC_007605.1 + 105578 0.66 0.999989
Target:  5'- uGACCGCGCgucGAgGCC-CAGGAg -3'
miRNA:   3'- uUUGGUGUGgu-UUgUGGuGUCCU- -5'
33385 3' -44.8 NC_007605.1 + 54620 0.66 0.999989
Target:  5'- -cGCCGCACCAccaucgucCACgaGCAGGGa -3'
miRNA:   3'- uuUGGUGUGGUuu------GUGg-UGUCCU- -5'
33385 3' -44.8 NC_007605.1 + 129443 0.66 0.999989
Target:  5'- gAGGCCACugUAAACcccgGCCuuGGGGu -3'
miRNA:   3'- -UUUGGUGugGUUUG----UGGugUCCU- -5'
33385 3' -44.8 NC_007605.1 + 86384 0.66 0.999989
Target:  5'- gAGGCCucuGCCGgggaacgggcGGCACCugAGGAg -3'
miRNA:   3'- -UUUGGug-UGGU----------UUGUGGugUCCU- -5'
33385 3' -44.8 NC_007605.1 + 80861 0.66 0.999989
Target:  5'- -cACCACuaguauCCAAACACCgu-GGAu -3'
miRNA:   3'- uuUGGUGu-----GGUUUGUGGuguCCU- -5'
33385 3' -44.8 NC_007605.1 + 76782 0.66 0.999989
Target:  5'- --cCCGC-CCcAACACCAUGGGu -3'
miRNA:   3'- uuuGGUGuGGuUUGUGGUGUCCu -5'
33385 3' -44.8 NC_007605.1 + 163435 0.66 0.999989
Target:  5'- cAAACCACuugcccacaaaACCAcuaauGGCACCcCGGGGa -3'
miRNA:   3'- -UUUGGUG-----------UGGU-----UUGUGGuGUCCU- -5'
33385 3' -44.8 NC_007605.1 + 16874 0.66 0.999987
Target:  5'- cAGACUACaagcuggacacaguaGCCAGGCACCuACuGGGg -3'
miRNA:   3'- -UUUGGUG---------------UGGUUUGUGG-UGuCCU- -5'
33385 3' -44.8 NC_007605.1 + 140938 0.66 0.999985
Target:  5'- cAAUCugGgcCCAAugGCCGCGGGc -3'
miRNA:   3'- uUUGGugU--GGUUugUGGUGUCCu -5'
33385 3' -44.8 NC_007605.1 + 80508 0.66 0.999985
Target:  5'- cAGCUACACCGAuCACCAgAcGAc -3'
miRNA:   3'- uUUGGUGUGGUUuGUGGUgUcCU- -5'
33385 3' -44.8 NC_007605.1 + 150145 0.66 0.999985
Target:  5'- cAAUCugGgcCCAAugGCCGCGGGc -3'
miRNA:   3'- uUUGGugU--GGUUugUGGUGUCCu -5'
33385 3' -44.8 NC_007605.1 + 137869 0.66 0.999985
Target:  5'- cAAUCugGgcCCAAugGCCGCGGGc -3'
miRNA:   3'- uUUGGugU--GGUUugUGGUGUCCu -5'
33385 3' -44.8 NC_007605.1 + 153214 0.66 0.999985
Target:  5'- cAAUCugGgcCCAAugGCCGCGGGc -3'
miRNA:   3'- uUUGGugU--GGUUugUGGUGUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.