miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33386 3' -38.1 NC_007605.1 + 6696 0.67 1
Target:  5'- ---gUCCCGGGUGGugAGGACGg -3'
miRNA:   3'- cguaAGGGUUCGUUugUUUUGU- -5'
33386 3' -38.1 NC_007605.1 + 89781 0.69 1
Target:  5'- aUAUUCCauuAGUAAACGAGGCGu -3'
miRNA:   3'- cGUAAGGgu-UCGUUUGUUUUGU- -5'
33386 3' -38.1 NC_007605.1 + 150625 0.69 1
Target:  5'- gGCgg-CCCGGGCuccAGCAGAACGu -3'
miRNA:   3'- -CGuaaGGGUUCGu--UUGUUUUGU- -5'
33386 3' -38.1 NC_007605.1 + 166803 0.68 1
Target:  5'- gGCAggCCgCAGGCAgaggacugcugcucuAGCAAAGCAc -3'
miRNA:   3'- -CGUaaGG-GUUCGU---------------UUGUUUUGU- -5'
33386 3' -38.1 NC_007605.1 + 105487 0.68 1
Target:  5'- cGCcUUCCCGcguGCAAACGugGCGa -3'
miRNA:   3'- -CGuAAGGGUu--CGUUUGUuuUGU- -5'
33386 3' -38.1 NC_007605.1 + 115771 0.68 1
Target:  5'- aGCAUgcCCCGAGCA-GCAAAcacGCGg -3'
miRNA:   3'- -CGUAa-GGGUUCGUuUGUUU---UGU- -5'
33386 3' -38.1 NC_007605.1 + 134971 0.68 1
Target:  5'- uGCA--CCCcAGUGGACAAGGCAg -3'
miRNA:   3'- -CGUaaGGGuUCGUUUGUUUUGU- -5'
33386 3' -38.1 NC_007605.1 + 161050 0.67 1
Target:  5'- cGCGUcgUCCCuAGUcAGCGAGGCGc -3'
miRNA:   3'- -CGUA--AGGGuUCGuUUGUUUUGU- -5'
33386 3' -38.1 NC_007605.1 + 163702 0.67 1
Target:  5'- ----cCCCAGGUAGGCAGAGgGa -3'
miRNA:   3'- cguaaGGGUUCGUUUGUUUUgU- -5'
33386 3' -38.1 NC_007605.1 + 88983 0.69 1
Target:  5'- cGUGUUCCCaAAGgAcGCGAAGCAg -3'
miRNA:   3'- -CGUAAGGG-UUCgUuUGUUUUGU- -5'
33386 3' -38.1 NC_007605.1 + 10573 0.69 1
Target:  5'- cCGggCCCAGGCcuuGCAGGGCAg -3'
miRNA:   3'- cGUaaGGGUUCGuu-UGUUUUGU- -5'
33386 3' -38.1 NC_007605.1 + 90140 0.69 1
Target:  5'- cGCAUUCCUccagcuGCGAGCAAGGgAa -3'
miRNA:   3'- -CGUAAGGGuu----CGUUUGUUUUgU- -5'
33386 3' -38.1 NC_007605.1 + 133090 0.67 1
Target:  5'- cGCGUgUCCCccgaagcgcucGAGCuGGCAGAGCGg -3'
miRNA:   3'- -CGUA-AGGG-----------UUCGuUUGUUUUGU- -5'
33386 3' -38.1 NC_007605.1 + 20538 0.66 1
Target:  5'- uGCGgccgCCCAGGgGGGCAAAuuGCGu -3'
miRNA:   3'- -CGUaa--GGGUUCgUUUGUUU--UGU- -5'
33386 3' -38.1 NC_007605.1 + 148067 0.73 1
Target:  5'- aCAUUCCCc-GCAAACAuGACAu -3'
miRNA:   3'- cGUAAGGGuuCGUUUGUuUUGU- -5'
33386 3' -38.1 NC_007605.1 + 90523 0.73 1
Target:  5'- aGCAUUCUCAggAGCAGGCugagGGGCAg -3'
miRNA:   3'- -CGUAAGGGU--UCGUUUGu---UUUGU- -5'
33386 3' -38.1 NC_007605.1 + 167461 0.7 1
Target:  5'- gGCAUUCCC-AGUAAAUGGAGgGa -3'
miRNA:   3'- -CGUAAGGGuUCGUUUGUUUUgU- -5'
33386 3' -38.1 NC_007605.1 + 111777 0.7 1
Target:  5'- aGgGUUCCUGaggcAGCAGGCAGAGCu -3'
miRNA:   3'- -CgUAAGGGU----UCGUUUGUUUUGu -5'
33386 3' -38.1 NC_007605.1 + 130583 0.7 1
Target:  5'- aGCAacaCCAGGCAAaaaacACAGAGCAa -3'
miRNA:   3'- -CGUaagGGUUCGUU-----UGUUUUGU- -5'
33386 3' -38.1 NC_007605.1 + 105348 0.69 1
Target:  5'- gGCGUUCCCAcgggggcgccccuGGCAGAgAGguGGCAg -3'
miRNA:   3'- -CGUAAGGGU-------------UCGUUUgUU--UUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.