miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33386 3' -38.1 NC_007605.1 + 23527 1.07 0.176453
Target:  5'- aGCAUUCCCAAGCAAACAAAACAu -3'
miRNA:   3'- -CGUAAGGGUUCGUUUGUUUUGU- -5'
33386 3' -38.1 NC_007605.1 + 159820 0.85 0.960048
Target:  5'- cGC--UCCCGGGCAAACAGGGCAg -3'
miRNA:   3'- -CGuaAGGGUUCGUUUGUUUUGU- -5'
33386 3' -38.1 NC_007605.1 + 166285 0.78 0.999462
Target:  5'- uGCAggCCCAGGCAcgagccuugcacccAACAAGGCAg -3'
miRNA:   3'- -CGUaaGGGUUCGU--------------UUGUUUUGU- -5'
33386 3' -38.1 NC_007605.1 + 77527 0.77 0.999774
Target:  5'- gGCAUUCCauaAAGCAAACAGGGa- -3'
miRNA:   3'- -CGUAAGGg--UUCGUUUGUUUUgu -5'
33386 3' -38.1 NC_007605.1 + 106349 0.75 0.999975
Target:  5'- cGCAUUCaCCAGGCAGcgcGgGAGGCAg -3'
miRNA:   3'- -CGUAAG-GGUUCGUU---UgUUUUGU- -5'
33386 3' -38.1 NC_007605.1 + 120397 0.74 0.999994
Target:  5'- uGCGUUCCCGggAGCcuGCAuGACAa -3'
miRNA:   3'- -CGUAAGGGU--UCGuuUGUuUUGU- -5'
33386 3' -38.1 NC_007605.1 + 163143 0.74 0.999998
Target:  5'- ---gUCCCAGGCAGGgacCAAGACAg -3'
miRNA:   3'- cguaAGGGUUCGUUU---GUUUUGU- -5'
33386 3' -38.1 NC_007605.1 + 88925 0.73 0.999999
Target:  5'- gGUGUUCCCAAGCuacuGCuGAAGCAc -3'
miRNA:   3'- -CGUAAGGGUUCGuu--UG-UUUUGU- -5'
33386 3' -38.1 NC_007605.1 + 49334 0.73 0.999999
Target:  5'- ---aUCCCGccgacaAGCGGACAGAGCAg -3'
miRNA:   3'- cguaAGGGU------UCGUUUGUUUUGU- -5'
33386 3' -38.1 NC_007605.1 + 20538 0.66 1
Target:  5'- uGCGgccgCCCAGGgGGGCAAAuuGCGu -3'
miRNA:   3'- -CGUaa--GGGUUCgUUUGUUU--UGU- -5'
33386 3' -38.1 NC_007605.1 + 161050 0.67 1
Target:  5'- cGCGUcgUCCCuAGUcAGCGAGGCGc -3'
miRNA:   3'- -CGUA--AGGGuUCGuUUGUUUUGU- -5'
33386 3' -38.1 NC_007605.1 + 163702 0.67 1
Target:  5'- ----cCCCAGGUAGGCAGAGgGa -3'
miRNA:   3'- cguaaGGGUUCGUUUGUUUUgU- -5'
33386 3' -38.1 NC_007605.1 + 166803 0.68 1
Target:  5'- gGCAggCCgCAGGCAgaggacugcugcucuAGCAAAGCAc -3'
miRNA:   3'- -CGUaaGG-GUUCGU---------------UUGUUUUGU- -5'
33386 3' -38.1 NC_007605.1 + 150625 0.69 1
Target:  5'- gGCgg-CCCGGGCuccAGCAGAACGu -3'
miRNA:   3'- -CGuaaGGGUUCGu--UUGUUUUGU- -5'
33386 3' -38.1 NC_007605.1 + 89781 0.69 1
Target:  5'- aUAUUCCauuAGUAAACGAGGCGu -3'
miRNA:   3'- cGUAAGGgu-UCGUUUGUUUUGU- -5'
33386 3' -38.1 NC_007605.1 + 88983 0.69 1
Target:  5'- cGUGUUCCCaAAGgAcGCGAAGCAg -3'
miRNA:   3'- -CGUAAGGG-UUCgUuUGUUUUGU- -5'
33386 3' -38.1 NC_007605.1 + 10573 0.69 1
Target:  5'- cCGggCCCAGGCcuuGCAGGGCAg -3'
miRNA:   3'- cGUaaGGGUUCGuu-UGUUUUGU- -5'
33386 3' -38.1 NC_007605.1 + 90140 0.69 1
Target:  5'- cGCAUUCCUccagcuGCGAGCAAGGgAa -3'
miRNA:   3'- -CGUAAGGGuu----CGUUUGUUUUgU- -5'
33386 3' -38.1 NC_007605.1 + 111777 0.7 1
Target:  5'- aGgGUUCCUGaggcAGCAGGCAGAGCu -3'
miRNA:   3'- -CgUAAGGGU----UCGUUUGUUUUGu -5'
33386 3' -38.1 NC_007605.1 + 167461 0.7 1
Target:  5'- gGCAUUCCC-AGUAAAUGGAGgGa -3'
miRNA:   3'- -CGUAAGGGuUCGUUUGUUUUgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.