miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33387 3' -44.9 NC_007605.1 + 59080 0.66 0.99998
Target:  5'- aGGggGCGcGGCUGgaUGCCcUCAUGc -3'
miRNA:   3'- -CCauUGU-CCGAC--ACGGaAGUAC- -5'
33387 3' -44.9 NC_007605.1 + 136554 0.66 0.99998
Target:  5'- cGGgcccGCGGGCggggacccggGUGCCUUCuUGg -3'
miRNA:   3'- -CCau--UGUCCGa---------CACGGAAGuAC- -5'
33387 3' -44.9 NC_007605.1 + 65395 0.66 0.999961
Target:  5'- cGGcgcACAGGUUGgcgGCgUUCAUGg -3'
miRNA:   3'- -CCau-UGUCCGACa--CGgAAGUAC- -5'
33387 3' -44.9 NC_007605.1 + 148189 0.67 0.99983
Target:  5'- uGUAGCAGGCa-UGUCUUCAUu -3'
miRNA:   3'- cCAUUGUCCGacACGGAAGUAc -5'
33387 3' -44.9 NC_007605.1 + 5022 0.68 0.999528
Target:  5'- -cUGGCAGGCcGUGCCacCGUGg -3'
miRNA:   3'- ccAUUGUCCGaCACGGaaGUAC- -5'
33387 3' -44.9 NC_007605.1 + 85451 0.69 0.999249
Target:  5'- ---uGCGGGCUGgcaGCCUUCAc- -3'
miRNA:   3'- ccauUGUCCGACa--CGGAAGUac -5'
33387 3' -44.9 NC_007605.1 + 154162 0.71 0.99391
Target:  5'- uGG-AGCGGGCcaagGCCUUCGUGg -3'
miRNA:   3'- -CCaUUGUCCGaca-CGGAAGUAC- -5'
33387 3' -44.9 NC_007605.1 + 122457 0.72 0.990386
Target:  5'- uGGUGaACGGGCUGgugGCCUUUg-- -3'
miRNA:   3'- -CCAU-UGUCCGACa--CGGAAGuac -5'
33387 3' -44.9 NC_007605.1 + 159156 0.73 0.973135
Target:  5'- aGGUGuACAGGCUGUGCg-UCAg- -3'
miRNA:   3'- -CCAU-UGUCCGACACGgaAGUac -5'
33387 3' -44.9 NC_007605.1 + 55041 0.74 0.966551
Target:  5'- cGGUGGCGGGCUuaaaGCCUUCGg- -3'
miRNA:   3'- -CCAUUGUCCGAca--CGGAAGUac -5'
33387 3' -44.9 NC_007605.1 + 65852 0.8 0.768005
Target:  5'- aGGUGACGGGCUGUucgacGCCUUCu-- -3'
miRNA:   3'- -CCAUUGUCCGACA-----CGGAAGuac -5'
33387 3' -44.9 NC_007605.1 + 148419 1.04 0.045841
Target:  5'- uGGUAACAGGCUGUGCCUUCAUGc -3'
miRNA:   3'- -CCAUUGUCCGACACGGAAGUAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.