miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33387 5' -43 NC_007605.1 + 148223 0.74 0.988699
Target:  5'- uGGcAUGAAGGCAcaGCCUGUUACc -3'
miRNA:   3'- -CCuUACUUCUGUa-CGGACGAUG- -5'
33387 5' -43 NC_007605.1 + 59985 0.66 1
Target:  5'- gGGGAUGAAGACAggugGUggGCggGCg -3'
miRNA:   3'- -CCUUACUUCUGUa---CGgaCGa-UG- -5'
33387 5' -43 NC_007605.1 + 57583 0.66 1
Target:  5'- uGGuGGUGggGGC-UGC-UGCUGCa -3'
miRNA:   3'- -CC-UUACuuCUGuACGgACGAUG- -5'
33387 5' -43 NC_007605.1 + 33943 0.66 1
Target:  5'- gGGAGgucUGggGugGcgaGCCUGCUGu -3'
miRNA:   3'- -CCUU---ACuuCugUa--CGGACGAUg -5'
33387 5' -43 NC_007605.1 + 30875 0.66 1
Target:  5'- gGGAGgucUGggGugGcgaGCCUGCUGu -3'
miRNA:   3'- -CCUU---ACuuCugUa--CGGACGAUg -5'
33387 5' -43 NC_007605.1 + 27806 0.66 1
Target:  5'- gGGAGgucUGggGugGcgaGCCUGCUGu -3'
miRNA:   3'- -CCUU---ACuuCugUa--CGGACGAUg -5'
33387 5' -43 NC_007605.1 + 24737 0.66 1
Target:  5'- gGGAGgucUGggGugGcgaGCCUGCUGu -3'
miRNA:   3'- -CCUU---ACuuCugUa--CGGACGAUg -5'
33387 5' -43 NC_007605.1 + 21668 0.66 1
Target:  5'- gGGAGgucUGggGugGcgaGCCUGCUGu -3'
miRNA:   3'- -CCUU---ACuuCugUa--CGGACGAUg -5'
33387 5' -43 NC_007605.1 + 18599 0.66 1
Target:  5'- gGGAGgucUGggGugGcgaGCCUGCUGu -3'
miRNA:   3'- -CCUU---ACuuCugUa--CGGACGAUg -5'
33387 5' -43 NC_007605.1 + 15530 0.66 1
Target:  5'- gGGAGgucUGggGugGcgaGCCUGCUGu -3'
miRNA:   3'- -CCUU---ACuuCugUa--CGGACGAUg -5'
33387 5' -43 NC_007605.1 + 75439 0.69 0.999879
Target:  5'- aGGAgGUGAGGugGUGCUUGUg-- -3'
miRNA:   3'- -CCU-UACUUCugUACGGACGaug -5'
33387 5' -43 NC_007605.1 + 131840 0.67 0.999994
Target:  5'- cGGAAUGAgaAGAgG-GCCUGCg-- -3'
miRNA:   3'- -CCUUACU--UCUgUaCGGACGaug -5'
33387 5' -43 NC_007605.1 + 106140 0.67 0.999996
Target:  5'- --cAUGggGGCAUGUCUGUUc- -3'
miRNA:   3'- ccuUACuuCUGUACGGACGAug -5'
33387 5' -43 NC_007605.1 + 104096 0.66 0.999999
Target:  5'- uGGAAUGAGGGCcugaGUCUcuuuaaGCUGCa -3'
miRNA:   3'- -CCUUACUUCUGua--CGGA------CGAUG- -5'
33387 5' -43 NC_007605.1 + 68364 0.66 0.999999
Target:  5'- --uGUGguGGCcgGCCUGCUGa -3'
miRNA:   3'- ccuUACuuCUGuaCGGACGAUg -5'
33387 5' -43 NC_007605.1 + 12461 0.66 1
Target:  5'- gGGAGgucUGggGugGcgaGCCUGCUGu -3'
miRNA:   3'- -CCUU---ACuuCugUa--CGGACGAUg -5'
33387 5' -43 NC_007605.1 + 12894 0.66 1
Target:  5'- gGGGGccUGuGGugGUgaGCCUGCUGCc -3'
miRNA:   3'- -CCUU--ACuUCugUA--CGGACGAUG- -5'
33387 5' -43 NC_007605.1 + 137227 0.74 0.988699
Target:  5'- gGGggUGGAGGCugcGCCUgaGCUGCc -3'
miRNA:   3'- -CCuuACUUCUGua-CGGA--CGAUG- -5'
33387 5' -43 NC_007605.1 + 114161 0.73 0.993846
Target:  5'- uGGGAcGggGugGUGCCUGgUAUg -3'
miRNA:   3'- -CCUUaCuuCugUACGGACgAUG- -5'
33387 5' -43 NC_007605.1 + 93774 0.73 0.995594
Target:  5'- aGggUGAGGAgAgGCCUGCUGu -3'
miRNA:   3'- cCuuACUUCUgUaCGGACGAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.