Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33388 | 3' | -49.5 | NC_007605.1 | + | 168941 | 0.66 | 0.995833 |
Target: 5'- -gGGCCGccgCCCUGGCAucugcuccggggccGGUgGCGg -3' miRNA: 3'- agUCGGCa--GGGACCGU--------------UCAaUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 154446 | 0.66 | 0.995624 |
Target: 5'- gUAGCCGUCCCggucagaggccgagGGCAugg-GCAg -3' miRNA: 3'- aGUCGGCAGGGa-------------CCGUucaaUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 13298 | 0.66 | 0.994617 |
Target: 5'- cCAGCCGgagggaccccggcagCCCgGGCGAGUcGCc -3' miRNA: 3'- aGUCGGCa--------------GGGaCCGUUCAaUGu -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 34781 | 0.66 | 0.994617 |
Target: 5'- cCAGCCGgagggaccccggcagCCCgGGCGAGUcGCc -3' miRNA: 3'- aGUCGGCa--------------GGGaCCGUUCAaUGu -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 31712 | 0.66 | 0.994617 |
Target: 5'- cCAGCCGgagggaccccggcagCCCgGGCGAGUcGCc -3' miRNA: 3'- aGUCGGCa--------------GGGaCCGUUCAaUGu -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 25574 | 0.66 | 0.994617 |
Target: 5'- cCAGCCGgagggaccccggcagCCCgGGCGAGUcGCc -3' miRNA: 3'- aGUCGGCa--------------GGGaCCGUUCAaUGu -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 22505 | 0.66 | 0.994617 |
Target: 5'- cCAGCCGgagggaccccggcagCCCgGGCGAGUcGCc -3' miRNA: 3'- aGUCGGCa--------------GGGaCCGUUCAaUGu -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 28643 | 0.66 | 0.994617 |
Target: 5'- cCAGCCGgagggaccccggcagCCCgGGCGAGUcGCc -3' miRNA: 3'- aGUCGGCa--------------GGGaCCGUUCAaUGu -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 19436 | 0.66 | 0.994617 |
Target: 5'- cCAGCCGgagggaccccggcagCCCgGGCGAGUcGCc -3' miRNA: 3'- aGUCGGCa--------------GGGaCCGUUCAaUGu -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 16367 | 0.66 | 0.994617 |
Target: 5'- cCAGCCGgagggaccccggcagCCCgGGCGAGUcGCc -3' miRNA: 3'- aGUCGGCa--------------GGGaCCGUUCAaUGu -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 162065 | 0.67 | 0.99145 |
Target: 5'- -gGGCCGcgUCCagguCUGGCAGGUcGCAg -3' miRNA: 3'- agUCGGC--AGG----GACCGUUCAaUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 49623 | 0.67 | 0.99145 |
Target: 5'- gCAGCCGUCgauaCCgggucaggUGGCGGGggACAa -3' miRNA: 3'- aGUCGGCAG----GG--------ACCGUUCaaUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 12983 | 0.67 | 0.988728 |
Target: 5'- cUAGCCG-CCCUGGCGugccgucucGGUgcGCAg -3' miRNA: 3'- aGUCGGCaGGGACCGU---------UCAa-UGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 162846 | 0.67 | 0.987135 |
Target: 5'- gUCAGagagcucuuCUGUCCCUGGCAAaacUGCAg -3' miRNA: 3'- -AGUC---------GGCAGGGACCGUUca-AUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 56917 | 0.67 | 0.987135 |
Target: 5'- -uGGCCuGUUCCUGGUAGGUa--- -3' miRNA: 3'- agUCGG-CAGGGACCGUUCAaugu -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 156991 | 0.67 | 0.987135 |
Target: 5'- cCAGCUGUCCCUcGUAGGUc--- -3' miRNA: 3'- aGUCGGCAGGGAcCGUUCAaugu -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 80123 | 0.67 | 0.985374 |
Target: 5'- cCAGCCGgaucUCCCUgGGCGAGa---- -3' miRNA: 3'- aGUCGGC----AGGGA-CCGUUCaaugu -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 108817 | 0.68 | 0.981308 |
Target: 5'- cCAGCCacCCCUGGCAgaGGUggACGg -3' miRNA: 3'- aGUCGGcaGGGACCGU--UCAa-UGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 61434 | 0.68 | 0.981308 |
Target: 5'- aCAGCCGUCgC-GGCGGGggcgGCGg -3' miRNA: 3'- aGUCGGCAGgGaCCGUUCaa--UGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 135353 | 0.68 | 0.973699 |
Target: 5'- aCAGuuGUUCCUGGUAGGg---- -3' miRNA: 3'- aGUCggCAGGGACCGUUCaaugu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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