Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33388 | 3' | -49.5 | NC_007605.1 | + | 23215 | 1.06 | 0.014285 |
Target: 5'- gUCAGCCGUCCCUGGCAAGUUACAg -3' miRNA: 3'- -AGUCGGCAGGGACCGUUCAAUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 92963 | 0.76 | 0.667085 |
Target: 5'- -gGGCUGUUCCUGGCAAGagucUUGCAg -3' miRNA: 3'- agUCGGCAGGGACCGUUC----AAUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 103641 | 0.73 | 0.856502 |
Target: 5'- cUCAGCCuGUCgCUGGCcGGggGCAu -3' miRNA: 3'- -AGUCGG-CAGgGACCGuUCaaUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 50379 | 0.71 | 0.915094 |
Target: 5'- aCGGCCGUCCCgGGCcuc-UACAg -3' miRNA: 3'- aGUCGGCAGGGaCCGuucaAUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 115037 | 0.71 | 0.921219 |
Target: 5'- cCuGCCGUCCCUGGCcacgAAGgacGCGg -3' miRNA: 3'- aGuCGGCAGGGACCG----UUCaa-UGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 38517 | 0.7 | 0.94771 |
Target: 5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3' miRNA: 3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 38267 | 0.7 | 0.94771 |
Target: 5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3' miRNA: 3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 39641 | 0.7 | 0.94771 |
Target: 5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3' miRNA: 3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 39516 | 0.7 | 0.94771 |
Target: 5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3' miRNA: 3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 38392 | 0.7 | 0.94771 |
Target: 5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3' miRNA: 3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 39266 | 0.7 | 0.94771 |
Target: 5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3' miRNA: 3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 38642 | 0.7 | 0.94771 |
Target: 5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3' miRNA: 3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 38767 | 0.7 | 0.94771 |
Target: 5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3' miRNA: 3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 38892 | 0.7 | 0.94771 |
Target: 5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3' miRNA: 3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 39391 | 0.7 | 0.94771 |
Target: 5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3' miRNA: 3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 39016 | 0.7 | 0.94771 |
Target: 5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3' miRNA: 3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 39141 | 0.7 | 0.94771 |
Target: 5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3' miRNA: 3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 74326 | 0.69 | 0.970723 |
Target: 5'- gUCAGCCGcUUCUUgGGCAGGUgaagcUGCAg -3' miRNA: 3'- -AGUCGGC-AGGGA-CCGUUCA-----AUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 112915 | 0.69 | 0.970723 |
Target: 5'- cUCGGCaguuguucaGUCCCUGGCcgAGGUccUGCAc -3' miRNA: 3'- -AGUCGg--------CAGGGACCG--UUCA--AUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 135353 | 0.68 | 0.973699 |
Target: 5'- aCAGuuGUUCCUGGUAGGg---- -3' miRNA: 3'- aGUCggCAGGGACCGUUCaaugu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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