miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33388 3' -49.5 NC_007605.1 + 12983 0.67 0.988728
Target:  5'- cUAGCCG-CCCUGGCGugccgucucGGUgcGCAg -3'
miRNA:   3'- aGUCGGCaGGGACCGU---------UCAa-UGU- -5'
33388 3' -49.5 NC_007605.1 + 13298 0.66 0.994617
Target:  5'- cCAGCCGgagggaccccggcagCCCgGGCGAGUcGCc -3'
miRNA:   3'- aGUCGGCa--------------GGGaCCGUUCAaUGu -5'
33388 3' -49.5 NC_007605.1 + 16367 0.66 0.994617
Target:  5'- cCAGCCGgagggaccccggcagCCCgGGCGAGUcGCc -3'
miRNA:   3'- aGUCGGCa--------------GGGaCCGUUCAaUGu -5'
33388 3' -49.5 NC_007605.1 + 19436 0.66 0.994617
Target:  5'- cCAGCCGgagggaccccggcagCCCgGGCGAGUcGCc -3'
miRNA:   3'- aGUCGGCa--------------GGGaCCGUUCAaUGu -5'
33388 3' -49.5 NC_007605.1 + 22505 0.66 0.994617
Target:  5'- cCAGCCGgagggaccccggcagCCCgGGCGAGUcGCc -3'
miRNA:   3'- aGUCGGCa--------------GGGaCCGUUCAaUGu -5'
33388 3' -49.5 NC_007605.1 + 23215 1.06 0.014285
Target:  5'- gUCAGCCGUCCCUGGCAAGUUACAg -3'
miRNA:   3'- -AGUCGGCAGGGACCGUUCAAUGU- -5'
33388 3' -49.5 NC_007605.1 + 25574 0.66 0.994617
Target:  5'- cCAGCCGgagggaccccggcagCCCgGGCGAGUcGCc -3'
miRNA:   3'- aGUCGGCa--------------GGGaCCGUUCAaUGu -5'
33388 3' -49.5 NC_007605.1 + 28643 0.66 0.994617
Target:  5'- cCAGCCGgagggaccccggcagCCCgGGCGAGUcGCc -3'
miRNA:   3'- aGUCGGCa--------------GGGaCCGUUCAaUGu -5'
33388 3' -49.5 NC_007605.1 + 31712 0.66 0.994617
Target:  5'- cCAGCCGgagggaccccggcagCCCgGGCGAGUcGCc -3'
miRNA:   3'- aGUCGGCa--------------GGGaCCGUUCAaUGu -5'
33388 3' -49.5 NC_007605.1 + 34781 0.66 0.994617
Target:  5'- cCAGCCGgagggaccccggcagCCCgGGCGAGUcGCc -3'
miRNA:   3'- aGUCGGCa--------------GGGaCCGUUCAaUGu -5'
33388 3' -49.5 NC_007605.1 + 38267 0.7 0.94771
Target:  5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3'
miRNA:   3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5'
33388 3' -49.5 NC_007605.1 + 38392 0.7 0.94771
Target:  5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3'
miRNA:   3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5'
33388 3' -49.5 NC_007605.1 + 38517 0.7 0.94771
Target:  5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3'
miRNA:   3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5'
33388 3' -49.5 NC_007605.1 + 38642 0.7 0.94771
Target:  5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3'
miRNA:   3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5'
33388 3' -49.5 NC_007605.1 + 38767 0.7 0.94771
Target:  5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3'
miRNA:   3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5'
33388 3' -49.5 NC_007605.1 + 38892 0.7 0.94771
Target:  5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3'
miRNA:   3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5'
33388 3' -49.5 NC_007605.1 + 39016 0.7 0.94771
Target:  5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3'
miRNA:   3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5'
33388 3' -49.5 NC_007605.1 + 39141 0.7 0.94771
Target:  5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3'
miRNA:   3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5'
33388 3' -49.5 NC_007605.1 + 39266 0.7 0.94771
Target:  5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3'
miRNA:   3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5'
33388 3' -49.5 NC_007605.1 + 39391 0.7 0.94771
Target:  5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3'
miRNA:   3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.