Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33388 | 3' | -49.5 | NC_007605.1 | + | 162065 | 0.67 | 0.99145 |
Target: 5'- -gGGCCGcgUCCagguCUGGCAGGUcGCAg -3' miRNA: 3'- agUCGGC--AGG----GACCGUUCAaUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 39641 | 0.7 | 0.94771 |
Target: 5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3' miRNA: 3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 74326 | 0.69 | 0.970723 |
Target: 5'- gUCAGCCGcUUCUUgGGCAGGUgaagcUGCAg -3' miRNA: 3'- -AGUCGGC-AGGGA-CCGUUCA-----AUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 61434 | 0.68 | 0.981308 |
Target: 5'- aCAGCCGUCgC-GGCGGGggcgGCGg -3' miRNA: 3'- aGUCGGCAGgGaCCGUUCaa--UGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 80123 | 0.67 | 0.985374 |
Target: 5'- cCAGCCGgaucUCCCUgGGCGAGa---- -3' miRNA: 3'- aGUCGGC----AGGGA-CCGUUCaaugu -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 162846 | 0.67 | 0.987135 |
Target: 5'- gUCAGagagcucuuCUGUCCCUGGCAAaacUGCAg -3' miRNA: 3'- -AGUC---------GGCAGGGACCGUUca-AUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 56917 | 0.67 | 0.987135 |
Target: 5'- -uGGCCuGUUCCUGGUAGGUa--- -3' miRNA: 3'- agUCGG-CAGGGACCGUUCAaugu -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 156991 | 0.67 | 0.987135 |
Target: 5'- cCAGCUGUCCCUcGUAGGUc--- -3' miRNA: 3'- aGUCGGCAGGGAcCGUUCAaugu -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 49623 | 0.67 | 0.99145 |
Target: 5'- gCAGCCGUCgauaCCgggucaggUGGCGGGggACAa -3' miRNA: 3'- aGUCGGCAG----GG--------ACCGUUCaaUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 39516 | 0.7 | 0.94771 |
Target: 5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3' miRNA: 3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 39391 | 0.7 | 0.94771 |
Target: 5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3' miRNA: 3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 39266 | 0.7 | 0.94771 |
Target: 5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3' miRNA: 3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 38267 | 0.7 | 0.94771 |
Target: 5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3' miRNA: 3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 38392 | 0.7 | 0.94771 |
Target: 5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3' miRNA: 3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 38517 | 0.7 | 0.94771 |
Target: 5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3' miRNA: 3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 38642 | 0.7 | 0.94771 |
Target: 5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3' miRNA: 3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 38767 | 0.7 | 0.94771 |
Target: 5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3' miRNA: 3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 38892 | 0.7 | 0.94771 |
Target: 5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3' miRNA: 3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 39016 | 0.7 | 0.94771 |
Target: 5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3' miRNA: 3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5' |
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33388 | 3' | -49.5 | NC_007605.1 | + | 39141 | 0.7 | 0.94771 |
Target: 5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3' miRNA: 3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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