miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33390 3' -41.7 NC_007605.1 + 166114 0.66 1
Target:  5'- -aCCCcAUaGCUGCAGCAg--- -3'
miRNA:   3'- uaGGGaUGaUGACGUCGUaaau -5'
33390 3' -41.7 NC_007605.1 + 65831 0.67 1
Target:  5'- aGUCCaaucagACUACUGguGCAg--- -3'
miRNA:   3'- -UAGGga----UGAUGACguCGUaaau -5'
33390 3' -41.7 NC_007605.1 + 133649 0.67 1
Target:  5'- uUCCCguacagAUUACcaaGCAGCGUUUGa -3'
miRNA:   3'- uAGGGa-----UGAUGa--CGUCGUAAAU- -5'
33390 3' -41.7 NC_007605.1 + 113932 0.66 1
Target:  5'- uGUCCUUGuCUGCUGCcauGCAc--- -3'
miRNA:   3'- -UAGGGAU-GAUGACGu--CGUaaau -5'
33390 3' -41.7 NC_007605.1 + 163063 0.66 1
Target:  5'- uAUgCCUACUAcCUGCAGUu---- -3'
miRNA:   3'- -UAgGGAUGAU-GACGUCGuaaau -5'
33390 3' -41.7 NC_007605.1 + 138648 0.66 1
Target:  5'- uUCCUUAUaGCUGguGUAUUUu -3'
miRNA:   3'- uAGGGAUGaUGACguCGUAAAu -5'
33390 3' -41.7 NC_007605.1 + 62200 0.66 1
Target:  5'- -aCCCUGCc-CUGCAGCc---- -3'
miRNA:   3'- uaGGGAUGauGACGUCGuaaau -5'
33390 3' -41.7 NC_007605.1 + 51367 0.66 1
Target:  5'- cUCCCaACUGCUGgAGCc---- -3'
miRNA:   3'- uAGGGaUGAUGACgUCGuaaau -5'
33390 3' -41.7 NC_007605.1 + 114442 0.67 1
Target:  5'- uUCCCgGCUACUguucGCGGCGg--- -3'
miRNA:   3'- uAGGGaUGAUGA----CGUCGUaaau -5'
33390 3' -41.7 NC_007605.1 + 125997 0.67 0.999999
Target:  5'- cGUCCCUGCUGCcggagguguccgUGgGGCAc--- -3'
miRNA:   3'- -UAGGGAUGAUG------------ACgUCGUaaau -5'
33390 3' -41.7 NC_007605.1 + 54822 0.67 0.999999
Target:  5'- gAUCCCUGCUcguggacgaugguGgUGCGGCGg--- -3'
miRNA:   3'- -UAGGGAUGA-------------UgACGUCGUaaau -5'
33390 3' -41.7 NC_007605.1 + 148746 0.67 0.999999
Target:  5'- cAUCCCcagaggGCgaauggGCUGCAGCAa--- -3'
miRNA:   3'- -UAGGGa-----UGa-----UGACGUCGUaaau -5'
33390 3' -41.7 NC_007605.1 + 72736 0.68 0.999997
Target:  5'- -aCCCUugUACUGCgcuuguucccacaauAGCAUg-- -3'
miRNA:   3'- uaGGGAugAUGACG---------------UCGUAaau -5'
33390 3' -41.7 NC_007605.1 + 6336 0.68 0.999997
Target:  5'- uAUCCCcGCUACgUGCAGUg---- -3'
miRNA:   3'- -UAGGGaUGAUG-ACGUCGuaaau -5'
33390 3' -41.7 NC_007605.1 + 102489 0.68 0.999997
Target:  5'- --gCCUACUACUGUGGCc---- -3'
miRNA:   3'- uagGGAUGAUGACGUCGuaaau -5'
33390 3' -41.7 NC_007605.1 + 94670 0.69 0.999993
Target:  5'- -cCCCUGC--CUGCAGCAc--- -3'
miRNA:   3'- uaGGGAUGauGACGUCGUaaau -5'
33390 3' -41.7 NC_007605.1 + 134197 0.69 0.999985
Target:  5'- cGUCCCUGCUcccccagGCaaUGCAGCGg--- -3'
miRNA:   3'- -UAGGGAUGA-------UG--ACGUCGUaaau -5'
33390 3' -41.7 NC_007605.1 + 66012 0.7 0.999961
Target:  5'- cUCCCggagGCU-CUGCGGCAg--- -3'
miRNA:   3'- uAGGGa---UGAuGACGUCGUaaau -5'
33390 3' -41.7 NC_007605.1 + 402 0.71 0.9999
Target:  5'- uUCCUUugUGCaGCGGCAUa-- -3'
miRNA:   3'- uAGGGAugAUGaCGUCGUAaau -5'
33390 3' -41.7 NC_007605.1 + 57785 0.71 0.999766
Target:  5'- uUCCCcgACUGCaGCAGCAg--- -3'
miRNA:   3'- uAGGGa-UGAUGaCGUCGUaaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.