miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33390 5' -44.6 NC_007605.1 + 61380 0.66 0.999986
Target:  5'- aGUGGA-CGGCAGCgGUGGcGGc- -3'
miRNA:   3'- aCAUUUaGCCGUCG-CAUC-CCau -5'
33390 5' -44.6 NC_007605.1 + 61602 0.66 0.999972
Target:  5'- gUGUGGGggCGGCGGCGgacccuuGGGa- -3'
miRNA:   3'- -ACAUUUa-GCCGUCGCau-----CCCau -5'
33390 5' -44.6 NC_007605.1 + 48439 0.67 0.999961
Target:  5'- ------gCGGgGGCGUAGGGg- -3'
miRNA:   3'- acauuuaGCCgUCGCAUCCCau -5'
33390 5' -44.6 NC_007605.1 + 120068 0.67 0.999927
Target:  5'- cGUGucUUGGcCAGCGgggagAGGGUGg -3'
miRNA:   3'- aCAUuuAGCC-GUCGCa----UCCCAU- -5'
33390 5' -44.6 NC_007605.1 + 163003 0.67 0.999927
Target:  5'- --aGGGUCGGCGGCa-GGGGUc -3'
miRNA:   3'- acaUUUAGCCGUCGcaUCCCAu -5'
33390 5' -44.6 NC_007605.1 + 4515 0.67 0.999927
Target:  5'- gGUGGAggaGcGCAGCGU-GGGUGa -3'
miRNA:   3'- aCAUUUag-C-CGUCGCAuCCCAU- -5'
33390 5' -44.6 NC_007605.1 + 136612 0.67 0.999903
Target:  5'- -------gGGCcGCGUAGGGUAg -3'
miRNA:   3'- acauuuagCCGuCGCAUCCCAU- -5'
33390 5' -44.6 NC_007605.1 + 157427 0.67 0.999871
Target:  5'- --cAGAaCGGCGGCG-GGGGUGc -3'
miRNA:   3'- acaUUUaGCCGUCGCaUCCCAU- -5'
33390 5' -44.6 NC_007605.1 + 108018 0.68 0.999778
Target:  5'- cGUAGAagagCGGCGGCGguugcgcccGGGUGa -3'
miRNA:   3'- aCAUUUa---GCCGUCGCau-------CCCAU- -5'
33390 5' -44.6 NC_007605.1 + 157288 0.69 0.999528
Target:  5'- gGUuGAUCuGGCGGCGcAGGGa- -3'
miRNA:   3'- aCAuUUAG-CCGUCGCaUCCCau -5'
33390 5' -44.6 NC_007605.1 + 52611 0.69 0.999528
Target:  5'- --gGAAggCGGCAGCGUAGGc-- -3'
miRNA:   3'- acaUUUa-GCCGUCGCAUCCcau -5'
33390 5' -44.6 NC_007605.1 + 52869 0.69 0.999249
Target:  5'- aGUagGAGUCGGCGGCGgcGGc-- -3'
miRNA:   3'- aCA--UUUAGCCGUCGCauCCcau -5'
33390 5' -44.6 NC_007605.1 + 63590 0.69 0.999063
Target:  5'- cGUGGcucucCGGCGGCGccgGGGGUGg -3'
miRNA:   3'- aCAUUua---GCCGUCGCa--UCCCAU- -5'
33390 5' -44.6 NC_007605.1 + 40018 0.71 0.996913
Target:  5'- --gGGAUCGGCGGgGcUGGGGUc -3'
miRNA:   3'- acaUUUAGCCGUCgC-AUCCCAu -5'
33390 5' -44.6 NC_007605.1 + 102075 0.72 0.988908
Target:  5'- --aAAGUCGGaccgaggcCGGCGUGGGGUGa -3'
miRNA:   3'- acaUUUAGCC--------GUCGCAUCCCAU- -5'
33390 5' -44.6 NC_007605.1 + 125573 0.73 0.98726
Target:  5'- --gAGGUgGGCAGCGUggucAGGGUGg -3'
miRNA:   3'- acaUUUAgCCGUCGCA----UCCCAU- -5'
33390 5' -44.6 NC_007605.1 + 148789 1.04 0.055033
Target:  5'- aUGUAAAUCGGCAGCGUAGGGUAc -3'
miRNA:   3'- -ACAUUUAGCCGUCGCAUCCCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.