miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33392 3' -50.2 NC_007605.1 + 169300 0.66 0.995821
Target:  5'- --aACCGuaggGgAGGCGGGUGagGCGGCUa -3'
miRNA:   3'- cagUGGU----UgUUCGUCCAUaaCGUCGA- -5'
33392 3' -50.2 NC_007605.1 + 65906 0.66 0.995103
Target:  5'- gGUCACCAACAAGgAGGag--GCccuuaGGCc -3'
miRNA:   3'- -CAGUGGUUGUUCgUCCauaaCG-----UCGa -5'
33392 3' -50.2 NC_007605.1 + 162993 0.66 0.995103
Target:  5'- ---cCCGAgAAGCAGGgucgGCGGCa -3'
miRNA:   3'- caguGGUUgUUCGUCCauaaCGUCGa -5'
33392 3' -50.2 NC_007605.1 + 24630 0.66 0.993368
Target:  5'- cGUgGCCAAgAggGGCAGGUAcugggUGCAGg- -3'
miRNA:   3'- -CAgUGGUUgU--UCGUCCAUa----ACGUCga -5'
33392 3' -50.2 NC_007605.1 + 21561 0.66 0.993368
Target:  5'- cGUgGCCAAgAggGGCAGGUAcugggUGCAGg- -3'
miRNA:   3'- -CAgUGGUUgU--UCGUCCAUa----ACGUCga -5'
33392 3' -50.2 NC_007605.1 + 15423 0.66 0.993368
Target:  5'- cGUgGCCAAgAggGGCAGGUAcugggUGCAGg- -3'
miRNA:   3'- -CAgUGGUUgU--UCGUCCAUa----ACGUCga -5'
33392 3' -50.2 NC_007605.1 + 164151 0.66 0.993368
Target:  5'- aUCACCGugGAGCcGGgcUU-CAGCa -3'
miRNA:   3'- cAGUGGUugUUCGuCCauAAcGUCGa -5'
33392 3' -50.2 NC_007605.1 + 12354 0.66 0.993368
Target:  5'- cGUgGCCAAgAggGGCAGGUAcugggUGCAGg- -3'
miRNA:   3'- -CAgUGGUUgU--UCGUCCAUa----ACGUCga -5'
33392 3' -50.2 NC_007605.1 + 33837 0.66 0.993368
Target:  5'- cGUgGCCAAgAggGGCAGGUAcugggUGCAGg- -3'
miRNA:   3'- -CAgUGGUUgU--UCGUCCAUa----ACGUCga -5'
33392 3' -50.2 NC_007605.1 + 30768 0.66 0.993368
Target:  5'- cGUgGCCAAgAggGGCAGGUAcugggUGCAGg- -3'
miRNA:   3'- -CAgUGGUUgU--UCGUCCAUa----ACGUCga -5'
33392 3' -50.2 NC_007605.1 + 27699 0.66 0.993368
Target:  5'- cGUgGCCAAgAggGGCAGGUAcugggUGCAGg- -3'
miRNA:   3'- -CAgUGGUUgU--UCGUCCAUa----ACGUCga -5'
33392 3' -50.2 NC_007605.1 + 18492 0.66 0.993368
Target:  5'- cGUgGCCAAgAggGGCAGGUAcugggUGCAGg- -3'
miRNA:   3'- -CAgUGGUUgU--UCGUCCAUa----ACGUCga -5'
33392 3' -50.2 NC_007605.1 + 154739 0.66 0.99317
Target:  5'- aUCcCCuGCAGGCGGGUGcuggacgauggGCAGCa -3'
miRNA:   3'- cAGuGGuUGUUCGUCCAUaa---------CGUCGa -5'
33392 3' -50.2 NC_007605.1 + 160620 0.67 0.991172
Target:  5'- --gGCCAGCAGGCcGGcGUUGC-GCa -3'
miRNA:   3'- cagUGGUUGUUCGuCCaUAACGuCGa -5'
33392 3' -50.2 NC_007605.1 + 60343 0.67 0.991172
Target:  5'- --aGCuCAACGAGCGGGUGgaGCAcGCc -3'
miRNA:   3'- cagUG-GUUGUUCGUCCAUaaCGU-CGa -5'
33392 3' -50.2 NC_007605.1 + 157532 0.67 0.991172
Target:  5'- gGUgGCCAACGAGCgcgGGGUcagagGUAGCc -3'
miRNA:   3'- -CAgUGGUUGUUCG---UCCAuaa--CGUCGa -5'
33392 3' -50.2 NC_007605.1 + 37815 0.67 0.989878
Target:  5'- uUUGCCAGCAacuuauAGCAuGGUAg-GCAGCUc -3'
miRNA:   3'- cAGUGGUUGU------UCGU-CCAUaaCGUCGA- -5'
33392 3' -50.2 NC_007605.1 + 46965 0.67 0.986847
Target:  5'- -aCACgGGCGAGgAGGgguaGUUGCAGUUc -3'
miRNA:   3'- caGUGgUUGUUCgUCCa---UAACGUCGA- -5'
33392 3' -50.2 NC_007605.1 + 114747 0.67 0.986847
Target:  5'- -cCACCAcaucggACGGGCAGGcauuuUUGguGCUg -3'
miRNA:   3'- caGUGGU------UGUUCGUCCau---AACguCGA- -5'
33392 3' -50.2 NC_007605.1 + 45406 0.67 0.986847
Target:  5'- gGUUuCUggUAGGCAGGUG--GCAGCa -3'
miRNA:   3'- -CAGuGGuuGUUCGUCCAUaaCGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.