miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33392 5' -62.4 NC_007605.1 + 155779 0.66 0.679106
Target:  5'- --cGCagGaCC-CCCUGCCgggUCUCGGUGGa -3'
miRNA:   3'- ucuCGa-C-GGaGGGACGG---GGAGCCACC- -5'
33392 5' -62.4 NC_007605.1 + 132575 0.66 0.669419
Target:  5'- gGGAGCaacugGCCUCUuuuuugucuCUGCCCC-CGGg-- -3'
miRNA:   3'- -UCUCGa----CGGAGG---------GACGGGGaGCCacc -5'
33392 5' -62.4 NC_007605.1 + 101835 0.66 0.669419
Target:  5'- gAGAGC-GCCUCUg-GCgCCCUCGGc-- -3'
miRNA:   3'- -UCUCGaCGGAGGgaCG-GGGAGCCacc -5'
33392 5' -62.4 NC_007605.1 + 9211 0.66 0.665535
Target:  5'- uGGuGUaGCCUCCCguagucuuccuggGCCCCUgGGaGGu -3'
miRNA:   3'- -UCuCGaCGGAGGGa------------CGGGGAgCCaCC- -5'
33392 5' -62.4 NC_007605.1 + 2299 0.66 0.659704
Target:  5'- -cGGCggGCUUCCagaggGCCCUUCuGGUGGc -3'
miRNA:   3'- ucUCGa-CGGAGGga---CGGGGAG-CCACC- -5'
33392 5' -62.4 NC_007605.1 + 125992 0.66 0.649969
Target:  5'- --uGCUGCgUCCCUGCUgCCggaGGUGu -3'
miRNA:   3'- ucuCGACGgAGGGACGG-GGag-CCACc -5'
33392 5' -62.4 NC_007605.1 + 123296 0.66 0.640221
Target:  5'- --uGCUGCC-CCCggGCCUCUUGGaaugcagcUGGg -3'
miRNA:   3'- ucuCGACGGaGGGa-CGGGGAGCC--------ACC- -5'
33392 5' -62.4 NC_007605.1 + 74376 0.66 0.640221
Target:  5'- gGGGGCccUGCgCUCgCUcacGCCCCUC-GUGGa -3'
miRNA:   3'- -UCUCG--ACG-GAGgGA---CGGGGAGcCACC- -5'
33392 5' -62.4 NC_007605.1 + 127446 0.66 0.630467
Target:  5'- gGGGGCUGUCUUuuUGCgCa--GGUGGg -3'
miRNA:   3'- -UCUCGACGGAGggACGgGgagCCACC- -5'
33392 5' -62.4 NC_007605.1 + 49033 0.66 0.630467
Target:  5'- cGGGGCcGCCagCCCgagcgGgCgCUCGGUGGc -3'
miRNA:   3'- -UCUCGaCGGa-GGGa----CgGgGAGCCACC- -5'
33392 5' -62.4 NC_007605.1 + 75918 0.66 0.628516
Target:  5'- aGGuGCUGCCccacagcaugagCCCaUGaCCCUCgGGUGGg -3'
miRNA:   3'- -UCuCGACGGa-----------GGG-ACgGGGAG-CCACC- -5'
33392 5' -62.4 NC_007605.1 + 3745 0.66 0.620715
Target:  5'- uGGGGCU-CCUCCCuUGCCCUaUCGuaccUGGg -3'
miRNA:   3'- -UCUCGAcGGAGGG-ACGGGG-AGCc---ACC- -5'
33392 5' -62.4 NC_007605.1 + 87711 0.67 0.60124
Target:  5'- cGAGCcgcGCCUCCCaccgugaGUCCUUCGGauacUGGg -3'
miRNA:   3'- uCUCGa--CGGAGGGa------CGGGGAGCC----ACC- -5'
33392 5' -62.4 NC_007605.1 + 3352 0.67 0.60124
Target:  5'- uGuGCUgGgCUCCaCgguuCCCCUCGGUGGa -3'
miRNA:   3'- uCuCGA-CgGAGG-Gac--GGGGAGCCACC- -5'
33392 5' -62.4 NC_007605.1 + 62245 0.67 0.60124
Target:  5'- -cAGCguggugGCCUCgCUGCCCCUggccCGGcGGc -3'
miRNA:   3'- ucUCGa-----CGGAGgGACGGGGA----GCCaCC- -5'
33392 5' -62.4 NC_007605.1 + 34977 0.67 0.591531
Target:  5'- cGGGCUGCCggggUCCCUccgGCUggCCU-GGUGGa -3'
miRNA:   3'- uCUCGACGG----AGGGA---CGG--GGAgCCACC- -5'
33392 5' -62.4 NC_007605.1 + 25770 0.67 0.591531
Target:  5'- cGGGCUGCCggggUCCCUccgGCUggCCU-GGUGGa -3'
miRNA:   3'- uCUCGACGG----AGGGA---CGG--GGAgCCACC- -5'
33392 5' -62.4 NC_007605.1 + 16563 0.67 0.591531
Target:  5'- cGGGCUGCCggggUCCCUccgGCUggCCU-GGUGGa -3'
miRNA:   3'- uCUCGACGG----AGGGA---CGG--GGAgCCACC- -5'
33392 5' -62.4 NC_007605.1 + 19632 0.67 0.591531
Target:  5'- cGGGCUGCCggggUCCCUccgGCUggCCU-GGUGGa -3'
miRNA:   3'- uCUCGACGG----AGGGA---CGG--GGAgCCACC- -5'
33392 5' -62.4 NC_007605.1 + 13494 0.67 0.591531
Target:  5'- cGGGCUGCCggggUCCCUccgGCUggCCU-GGUGGa -3'
miRNA:   3'- uCUCGACGG----AGGGA---CGG--GGAgCCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.