miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33396 5' -41.4 NC_007605.1 + 169688 0.68 1
Target:  5'- -aGGGGGCaGggUcGCAGggGGUGu -3'
miRNA:   3'- cgUUCCCG-CuuA-CGUCuuUUAU- -5'
33396 5' -41.4 NC_007605.1 + 90253 0.66 1
Target:  5'- gGCAAGGGCGuagGUGGGGc--- -3'
miRNA:   3'- -CGUUCCCGCuuaCGUCUUuuau -5'
33396 5' -41.4 NC_007605.1 + 7481 0.66 1
Target:  5'- gGCcGGGGCGAuaccuugggcaucAUGCAGGGu--- -3'
miRNA:   3'- -CGuUCCCGCU-------------UACGUCUUuuau -5'
33396 5' -41.4 NC_007605.1 + 110840 0.66 1
Target:  5'- cGCAGGaGCcgaGggUGCAGAAGAc- -3'
miRNA:   3'- -CGUUCcCG---CuuACGUCUUUUau -5'
33396 5' -41.4 NC_007605.1 + 43930 0.68 1
Target:  5'- gGCGGGGuGCucuGAUGCGGAAAAg- -3'
miRNA:   3'- -CGUUCC-CGc--UUACGUCUUUUau -5'
33396 5' -41.4 NC_007605.1 + 66817 0.67 1
Target:  5'- ---uGGGUGGAUGUAGGGAGc- -3'
miRNA:   3'- cguuCCCGCUUACGUCUUUUau -5'
33396 5' -41.4 NC_007605.1 + 54045 0.67 1
Target:  5'- cGCAGGGGaGGggGCAGGAu--- -3'
miRNA:   3'- -CGUUCCCgCUuaCGUCUUuuau -5'
33396 5' -41.4 NC_007605.1 + 111685 0.66 1
Target:  5'- cGCAGGGGgGA--GCAGAc---- -3'
miRNA:   3'- -CGUUCCCgCUuaCGUCUuuuau -5'
33396 5' -41.4 NC_007605.1 + 135223 0.66 1
Target:  5'- gGUggGGGUGGuggggGUGguGggGGUGg -3'
miRNA:   3'- -CGuuCCCGCU-----UACguCuuUUAU- -5'
33396 5' -41.4 NC_007605.1 + 57527 0.66 1
Target:  5'- aGCcGGGGCGGcugauUGCGGggGc-- -3'
miRNA:   3'- -CGuUCCCGCUu----ACGUCuuUuau -5'
33396 5' -41.4 NC_007605.1 + 48438 0.66 1
Target:  5'- gGCGGGGGCGua-GgGGAGGAg- -3'
miRNA:   3'- -CGUUCCCGCuuaCgUCUUUUau -5'
33396 5' -41.4 NC_007605.1 + 95907 0.66 1
Target:  5'- gGCAggaGGGGCaGGAgggGCAGGAGGg- -3'
miRNA:   3'- -CGU---UCCCG-CUUa--CGUCUUUUau -5'
33396 5' -41.4 NC_007605.1 + 170226 0.68 1
Target:  5'- -aGGGGGCaGggUcGCAGggGGUGu -3'
miRNA:   3'- cgUUCCCG-CuuA-CGUCuuUUAU- -5'
33396 5' -41.4 NC_007605.1 + 170748 0.68 1
Target:  5'- -aGGGGGCaGggUcGCAGggGGUGu -3'
miRNA:   3'- cgUUCCCG-CuuA-CGUCuuUUAU- -5'
33396 5' -41.4 NC_007605.1 + 171286 0.68 1
Target:  5'- -aGGGGGCaGggUcGCAGggGGUGu -3'
miRNA:   3'- cgUUCCCG-CuuA-CGUCuuUUAU- -5'
33396 5' -41.4 NC_007605.1 + 97466 0.67 1
Target:  5'- -uGAGGGUGAGgaaggGCAGGAGu-- -3'
miRNA:   3'- cgUUCCCGCUUa----CGUCUUUuau -5'
33396 5' -41.4 NC_007605.1 + 163000 0.67 1
Target:  5'- aGCAGGGuCGGcgGCAGggGu-- -3'
miRNA:   3'- -CGUUCCcGCUuaCGUCuuUuau -5'
33396 5' -41.4 NC_007605.1 + 166348 0.67 1
Target:  5'- aUAAGGGCGccaucuaGCGGGAGAUGu -3'
miRNA:   3'- cGUUCCCGCuua----CGUCUUUUAU- -5'
33396 5' -41.4 NC_007605.1 + 96174 0.67 1
Target:  5'- aGCAggaGGGGCaGGAgggGCAGGAGGg- -3'
miRNA:   3'- -CGU---UCCCG-CUUa--CGUCUUUUau -5'
33396 5' -41.4 NC_007605.1 + 54183 0.66 1
Target:  5'- gGC-GGGGCGGuUGCcuGGggGAUAg -3'
miRNA:   3'- -CGuUCCCGCUuACG--UCuuUUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.