Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33397 | 3' | -53.6 | NC_007605.1 | + | 153500 | 1.07 | 0.007223 |
Target: 5'- aGAUCCACGACCGCAUCCAGUACGUCUu -3' miRNA: 3'- -CUAGGUGCUGGCGUAGGUCAUGCAGA- -5' |
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33397 | 3' | -53.6 | NC_007605.1 | + | 59191 | 0.76 | 0.550931 |
Target: 5'- --gCCGCuuuGCCgGCAUCCAGUGCGUCa -3' miRNA: 3'- cuaGGUGc--UGG-CGUAGGUCAUGCAGa -5' |
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33397 | 3' | -53.6 | NC_007605.1 | + | 49522 | 0.71 | 0.809493 |
Target: 5'- cGUCCACGGCCGUAgcCCAGUccGCGa-- -3' miRNA: 3'- cUAGGUGCUGGCGUa-GGUCA--UGCaga -5' |
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33397 | 3' | -53.6 | NC_007605.1 | + | 162437 | 0.71 | 0.826847 |
Target: 5'- cGUCCACcGCCGCAUCC---ACGUCc -3' miRNA: 3'- cUAGGUGcUGGCGUAGGucaUGCAGa -5' |
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33397 | 3' | -53.6 | NC_007605.1 | + | 161524 | 0.69 | 0.895252 |
Target: 5'- -cUCCAcCGcCCGCGUgcCCAGUACGUg- -3' miRNA: 3'- cuAGGU-GCuGGCGUA--GGUCAUGCAga -5' |
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33397 | 3' | -53.6 | NC_007605.1 | + | 162938 | 0.67 | 0.943787 |
Target: 5'- -cUCCACagcguaguuucccgGACCGUugguUCCGGUcACGUCUg -3' miRNA: 3'- cuAGGUG--------------CUGGCGu---AGGUCA-UGCAGA- -5' |
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33397 | 3' | -53.6 | NC_007605.1 | + | 49146 | 0.67 | 0.949477 |
Target: 5'- --aCCAcCGGCCGCAUgCAaGUGCgGUCg -3' miRNA: 3'- cuaGGU-GCUGGCGUAgGU-CAUG-CAGa -5' |
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33397 | 3' | -53.6 | NC_007605.1 | + | 139241 | 0.67 | 0.949477 |
Target: 5'- aGGUCCAUagcACCGCuAUCCAcUAUGUCUc -3' miRNA: 3'- -CUAGGUGc--UGGCG-UAGGUcAUGCAGA- -5' |
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33397 | 3' | -53.6 | NC_007605.1 | + | 95830 | 0.67 | 0.95746 |
Target: 5'- aGGUCCACuGCCGCcggagccuucugGUCCAGaUGUGUCUc -3' miRNA: 3'- -CUAGGUGcUGGCG------------UAGGUC-AUGCAGA- -5' |
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33397 | 3' | -53.6 | NC_007605.1 | + | 53198 | 0.67 | 0.95746 |
Target: 5'- -cUCCAUuGCCcCAUCCAGUugGUg- -3' miRNA: 3'- cuAGGUGcUGGcGUAGGUCAugCAga -5' |
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33397 | 3' | -53.6 | NC_007605.1 | + | 62538 | 0.66 | 0.97074 |
Target: 5'- cGUCCAgGGCCGCcUCCAG-AUGg-- -3' miRNA: 3'- cUAGGUgCUGGCGuAGGUCaUGCaga -5' |
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33397 | 3' | -53.6 | NC_007605.1 | + | 74261 | 0.66 | 0.978528 |
Target: 5'- uGUCUGCG-CCGCAUCUAccGCGUUa -3' miRNA: 3'- cUAGGUGCuGGCGUAGGUcaUGCAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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