miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33397 5' -54.3 NC_007605.1 + 171235 0.66 0.959655
Target:  5'- uCGGGggGGuCGGGGGgcGCCGcgcGGGCg -3'
miRNA:   3'- -GCUCuuUCuGCCUCUacCGGCu--CCUG- -5'
33397 5' -54.3 NC_007605.1 + 155338 0.66 0.959655
Target:  5'- aCGAGucccggugcuGGAGGCgGGGGAUGGCgCGGcGGCa -3'
miRNA:   3'- -GCUC----------UUUCUG-CCUCUACCG-GCUcCUG- -5'
33397 5' -54.3 NC_007605.1 + 48017 0.66 0.955943
Target:  5'- -aAGAGGGACGGgccaAGAUggGGCgCGAGGGu -3'
miRNA:   3'- gcUCUUUCUGCC----UCUA--CCG-GCUCCUg -5'
33397 5' -54.3 NC_007605.1 + 97452 0.66 0.955943
Target:  5'- gGAGGu-GAUGGAGAUgaGGgUGAGGAa -3'
miRNA:   3'- gCUCUuuCUGCCUCUA--CCgGCUCCUg -5'
33397 5' -54.3 NC_007605.1 + 169638 0.66 0.955943
Target:  5'- uCGGGggGGuCGGGGGgcGCCGccGGGCg -3'
miRNA:   3'- -GCUCuuUCuGCCUCUacCGGCu-CCUG- -5'
33397 5' -54.3 NC_007605.1 + 38715 0.67 0.952005
Target:  5'- ----cGGGugGGGGGUGGCCccgcuGGGCa -3'
miRNA:   3'- gcucuUUCugCCUCUACCGGcu---CCUG- -5'
33397 5' -54.3 NC_007605.1 + 38340 0.67 0.952005
Target:  5'- ----cGGGugGGGGGUGGCCccgcuGGGCa -3'
miRNA:   3'- gcucuUUCugCCUCUACCGGcu---CCUG- -5'
33397 5' -54.3 NC_007605.1 + 38465 0.67 0.952005
Target:  5'- ----cGGGugGGGGGUGGCCccgcuGGGCa -3'
miRNA:   3'- gcucuUUCugCCUCUACCGGcu---CCUG- -5'
33397 5' -54.3 NC_007605.1 + 45102 0.67 0.952005
Target:  5'- cCGAGGcucucgcaGAGugGGcAGAUGGuCCGuGaGGCa -3'
miRNA:   3'- -GCUCU--------UUCugCC-UCUACC-GGCuC-CUG- -5'
33397 5' -54.3 NC_007605.1 + 38590 0.67 0.952005
Target:  5'- ----cGGGugGGGGGUGGCCccgcuGGGCa -3'
miRNA:   3'- gcucuUUCugCCUCUACCGGcu---CCUG- -5'
33397 5' -54.3 NC_007605.1 + 38840 0.67 0.952005
Target:  5'- ----cGGGugGGGGGUGGCCccgcuGGGCa -3'
miRNA:   3'- gcucuUUCugCCUCUACCGGcu---CCUG- -5'
33397 5' -54.3 NC_007605.1 + 38964 0.67 0.952005
Target:  5'- ----cGGGugGGGGGUGGCCccgcuGGGCa -3'
miRNA:   3'- gcucuUUCugCCUCUACCGGcu---CCUG- -5'
33397 5' -54.3 NC_007605.1 + 39089 0.67 0.952005
Target:  5'- ----cGGGugGGGGGUGGCCccgcuGGGCa -3'
miRNA:   3'- gcucuUUCugCCUCUACCGGcu---CCUG- -5'
33397 5' -54.3 NC_007605.1 + 39214 0.67 0.952005
Target:  5'- ----cGGGugGGGGGUGGCCccgcuGGGCa -3'
miRNA:   3'- gcucuUUCugCCUCUACCGGcu---CCUG- -5'
33397 5' -54.3 NC_007605.1 + 39339 0.67 0.952005
Target:  5'- ----cGGGugGGGGGUGGCCccgcuGGGCa -3'
miRNA:   3'- gcucuUUCugCCUCUACCGGcu---CCUG- -5'
33397 5' -54.3 NC_007605.1 + 39589 0.67 0.952005
Target:  5'- ----cGGGugGGGGGUGGCCccgcuGGGCa -3'
miRNA:   3'- gcucuUUCugCCUCUACCGGcu---CCUG- -5'
33397 5' -54.3 NC_007605.1 + 39714 0.67 0.952005
Target:  5'- ----cGGGugGGGGGUGGCCccgcuGGGCa -3'
miRNA:   3'- gcucuUUCugCCUCUACCGGcu---CCUG- -5'
33397 5' -54.3 NC_007605.1 + 62598 0.67 0.952005
Target:  5'- gGAGuagguaguAGGCGu-GGUGGCgGAGGACc -3'
miRNA:   3'- gCUCuu------UCUGCcuCUACCGgCUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 39464 0.67 0.952005
Target:  5'- ----cGGGugGGGGGUGGCCccgcuGGGCa -3'
miRNA:   3'- gcucuUUCugCCUCUACCGGcu---CCUG- -5'
33397 5' -54.3 NC_007605.1 + 25685 0.67 0.947837
Target:  5'- aGcAGggGGACaGAGAgaagGGCCGGuGGGg -3'
miRNA:   3'- gC-UCuuUCUGcCUCUa---CCGGCU-CCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.