miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33399 3' -54.6 NC_007605.1 + 50799 0.66 0.945261
Target:  5'- gUCCUGG-GGCUggaGCCCAAAAGu----- -3'
miRNA:   3'- -AGGACCgCCGG---CGGGUUUUCcuuuug -5'
33399 3' -54.6 NC_007605.1 + 134522 0.66 0.942534
Target:  5'- -gCUGGCGGCgCGCacaCAGcugcgucuagccuucGAGGAcgGCg -3'
miRNA:   3'- agGACCGCCG-GCGg--GUU---------------UUCCUuuUG- -5'
33399 3' -54.6 NC_007605.1 + 133393 0.66 0.942534
Target:  5'- aCCUGGCGGUagugcagugucccugCuGCCCAu--GGAAuGCu -3'
miRNA:   3'- aGGACCGCCG---------------G-CGGGUuuuCCUUuUG- -5'
33399 3' -54.6 NC_007605.1 + 82570 0.66 0.940668
Target:  5'- cCCcGaGUGGCCuGUUCAAGAGGAGggUg -3'
miRNA:   3'- aGGaC-CGCCGG-CGGGUUUUCCUUuuG- -5'
33399 3' -54.6 NC_007605.1 + 163540 0.66 0.940668
Target:  5'- -aCUGGCGGagcuggggcaCGCCCucuGGGAAcACc -3'
miRNA:   3'- agGACCGCCg---------GCGGGuuuUCCUUuUG- -5'
33399 3' -54.6 NC_007605.1 + 4891 0.66 0.940668
Target:  5'- cUCCUGGCGGCCuuCaCGAAugccGGAu--- -3'
miRNA:   3'- -AGGACCGCCGGcgG-GUUUu---CCUuuug -5'
33399 3' -54.6 NC_007605.1 + 98844 0.66 0.940668
Target:  5'- cUCUGGggucucaGGCCuCCCAGucuauccagGAGGAGGACg -3'
miRNA:   3'- aGGACCg------CCGGcGGGUU---------UUCCUUUUG- -5'
33399 3' -54.6 NC_007605.1 + 39245 0.66 0.940668
Target:  5'- gCCcGGCGGCUGgCgAAAaugucAGGAGGAUg -3'
miRNA:   3'- aGGaCCGCCGGCgGgUUU-----UCCUUUUG- -5'
33399 3' -54.6 NC_007605.1 + 103754 0.66 0.935833
Target:  5'- cCCUuGUGGCCGCUugUAAAauugcAGGGAAGCc -3'
miRNA:   3'- aGGAcCGCCGGCGG--GUUU-----UCCUUUUG- -5'
33399 3' -54.6 NC_007605.1 + 78022 0.66 0.935833
Target:  5'- cUCCUGauuuGCGGCCacgcucuCCCAGAGGGuGAGg -3'
miRNA:   3'- -AGGAC----CGCCGGc------GGGUUUUCCuUUUg -5'
33399 3' -54.6 NC_007605.1 + 109297 0.66 0.935833
Target:  5'- -gCUGGUGGCCgacacuuaucugGCCCGGuGGGAc--- -3'
miRNA:   3'- agGACCGCCGG------------CGGGUUuUCCUuuug -5'
33399 3' -54.6 NC_007605.1 + 150465 0.66 0.935833
Target:  5'- ---gGGCGuGCCGCCCu---GGAGAu- -3'
miRNA:   3'- aggaCCGC-CGGCGGGuuuuCCUUUug -5'
33399 3' -54.6 NC_007605.1 + 49377 0.67 0.930755
Target:  5'- -gCUGGUGGCCuuuGCCUucuccGAGAGGAcccGGGCc -3'
miRNA:   3'- agGACCGCCGG---CGGG-----UUUUCCU---UUUG- -5'
33399 3' -54.6 NC_007605.1 + 151122 0.67 0.925977
Target:  5'- cCCUcGGCGGCCcguGCCCcagcuccgucacGGggGGCg -3'
miRNA:   3'- aGGA-CCGCCGG---CGGGuuuu--------CCuuUUG- -5'
33399 3' -54.6 NC_007605.1 + 110458 0.67 0.925433
Target:  5'- --gUGGCGGCgGCCCcgc-GGAcAGACg -3'
miRNA:   3'- aggACCGCCGgCGGGuuuuCCU-UUUG- -5'
33399 3' -54.6 NC_007605.1 + 121261 0.67 0.925433
Target:  5'- cCCgGGaCGGCCGUCUggcGAuAGGAGGAg -3'
miRNA:   3'- aGGaCC-GCCGGCGGG---UUuUCCUUUUg -5'
33399 3' -54.6 NC_007605.1 + 10799 0.67 0.919867
Target:  5'- gCCgGGCuGCUGCUgGguGGAGGAGGGCa -3'
miRNA:   3'- aGGaCCGcCGGCGGgU--UUUCCUUUUG- -5'
33399 3' -54.6 NC_007605.1 + 124022 0.67 0.919867
Target:  5'- aUCCaGGCaGGCCaGCCCcAGAuccaggagccuGGAGAACc -3'
miRNA:   3'- -AGGaCCG-CCGG-CGGGuUUU-----------CCUUUUG- -5'
33399 3' -54.6 NC_007605.1 + 59035 0.67 0.919297
Target:  5'- gCCUGGUugcacgaGGCCguGCCUAGGAugcGGAGGGCc -3'
miRNA:   3'- aGGACCG-------CCGG--CGGGUUUU---CCUUUUG- -5'
33399 3' -54.6 NC_007605.1 + 96469 0.67 0.914057
Target:  5'- cUCC-GGCuGCCGCaCCAc--GGGAGGCg -3'
miRNA:   3'- -AGGaCCGcCGGCG-GGUuuuCCUUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.