miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33399 5' -60.7 NC_007605.1 + 53830 0.67 0.711217
Target:  5'- cCGGCCgCUGcCCGGGccAgGGCgGCCu -3'
miRNA:   3'- aGCCGGaGACuGGCCC--UgCCGaUGGu -5'
33399 5' -60.7 NC_007605.1 + 54744 0.67 0.707384
Target:  5'- cCGGcCCUCUGGCCagacuggacgcuuGGcccgccacccccGCGGCUACCGc -3'
miRNA:   3'- aGCC-GGAGACUGGc------------CC------------UGCCGAUGGU- -5'
33399 5' -60.7 NC_007605.1 + 57432 0.67 0.701618
Target:  5'- gCGGCUgaUGGCgGGGGCuGCUGCUg -3'
miRNA:   3'- aGCCGGagACUGgCCCUGcCGAUGGu -5'
33399 5' -60.7 NC_007605.1 + 119758 0.67 0.691965
Target:  5'- cUCGGCUcagguUCcGGCCcuGGGACGGCagcaGCCGc -3'
miRNA:   3'- -AGCCGG-----AGaCUGG--CCCUGCCGa---UGGU- -5'
33399 5' -60.7 NC_007605.1 + 50410 0.67 0.691965
Target:  5'- gUGGCCUUUGGCaCGGGcCuGGC-ACCc -3'
miRNA:   3'- aGCCGGAGACUG-GCCCuG-CCGaUGGu -5'
33399 5' -60.7 NC_007605.1 + 136405 0.67 0.682266
Target:  5'- cCGGCUUUUGuagguCCGGGGCGucGCUgGCCu -3'
miRNA:   3'- aGCCGGAGACu----GGCCCUGC--CGA-UGGu -5'
33399 5' -60.7 NC_007605.1 + 62568 0.67 0.67253
Target:  5'- gCGGUCUCUGGCCca-ACGGCcACCu -3'
miRNA:   3'- aGCCGGAGACUGGcccUGCCGaUGGu -5'
33399 5' -60.7 NC_007605.1 + 151405 0.67 0.67253
Target:  5'- -gGGCCUCguaGGCCGaGACGgGCaGCCGg -3'
miRNA:   3'- agCCGGAGa--CUGGCcCUGC-CGaUGGU- -5'
33399 5' -60.7 NC_007605.1 + 118741 0.67 0.666673
Target:  5'- aCGGCCUC-GGCgGGGAacgugacaggcacaaCGGCUgugacuacACCAu -3'
miRNA:   3'- aGCCGGAGaCUGgCCCU---------------GCCGA--------UGGU- -5'
33399 5' -60.7 NC_007605.1 + 135195 0.68 0.623542
Target:  5'- -gGGCCUCUG-CCGGGAagcccaccCGG--GCCAg -3'
miRNA:   3'- agCCGGAGACuGGCCCU--------GCCgaUGGU- -5'
33399 5' -60.7 NC_007605.1 + 30241 0.69 0.584414
Target:  5'- -gGGCUagUCUGGgUGGGAUuaGGCUGCCu -3'
miRNA:   3'- agCCGG--AGACUgGCCCUG--CCGAUGGu -5'
33399 5' -60.7 NC_007605.1 + 14897 0.69 0.584414
Target:  5'- -gGGCUagUCUGGgUGGGAUuaGGCUGCCu -3'
miRNA:   3'- agCCGG--AGACUgGCCCUG--CCGAUGGu -5'
33399 5' -60.7 NC_007605.1 + 17965 0.69 0.584414
Target:  5'- -gGGCUagUCUGGgUGGGAUuaGGCUGCCu -3'
miRNA:   3'- agCCGG--AGACUgGCCCUG--CCGAUGGu -5'
33399 5' -60.7 NC_007605.1 + 21034 0.69 0.584414
Target:  5'- -gGGCUagUCUGGgUGGGAUuaGGCUGCCu -3'
miRNA:   3'- agCCGG--AGACUgGCCCUG--CCGAUGGu -5'
33399 5' -60.7 NC_007605.1 + 33310 0.69 0.584414
Target:  5'- -gGGCUagUCUGGgUGGGAUuaGGCUGCCu -3'
miRNA:   3'- agCCGG--AGACUgGCCCUG--CCGAUGGu -5'
33399 5' -60.7 NC_007605.1 + 27172 0.69 0.584414
Target:  5'- -gGGCUagUCUGGgUGGGAUuaGGCUGCCu -3'
miRNA:   3'- agCCGG--AGACUgGCCCUG--CCGAUGGu -5'
33399 5' -60.7 NC_007605.1 + 24103 0.69 0.584414
Target:  5'- -gGGCUagUCUGGgUGGGAUuaGGCUGCCu -3'
miRNA:   3'- agCCGG--AGACUgGCCCUG--CCGAUGGu -5'
33399 5' -60.7 NC_007605.1 + 99371 0.69 0.565015
Target:  5'- -aGGCCcgucccCUGACCGGcGCGGgaGCCGg -3'
miRNA:   3'- agCCGGa-----GACUGGCCcUGCCgaUGGU- -5'
33399 5' -60.7 NC_007605.1 + 63500 0.69 0.555377
Target:  5'- cCuGCCUC-GACCcGGGCGGCUACa- -3'
miRNA:   3'- aGcCGGAGaCUGGcCCUGCCGAUGgu -5'
33399 5' -60.7 NC_007605.1 + 2722 0.7 0.516425
Target:  5'- -aGGCCUUUcaGACCaGGGCGGCggcugaaUGCCAu -3'
miRNA:   3'- agCCGGAGA--CUGGcCCUGCCG-------AUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.