miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33401 3' -50.7 NC_007605.1 + 37648 0.66 0.996227
Target:  5'- gCUAUUAUGGGaCUcCGGU--UCAUGUa -3'
miRNA:   3'- aGGUAAUACCC-GAuGCCGuuGGUACG- -5'
33401 3' -50.7 NC_007605.1 + 85117 0.66 0.995579
Target:  5'- gCCA--GUGGGC-ACccGCcACCAUGCa -3'
miRNA:   3'- aGGUaaUACCCGaUGc-CGuUGGUACG- -5'
33401 3' -50.7 NC_007605.1 + 69676 0.66 0.995579
Target:  5'- gUCUAUUAcuuuagcgGGGUaGCGGCccugagcgcAGCUAUGCg -3'
miRNA:   3'- -AGGUAAUa-------CCCGaUGCCG---------UUGGUACG- -5'
33401 3' -50.7 NC_007605.1 + 119519 0.66 0.995579
Target:  5'- aUCCAggaggGGGCcAUGGCuGCCAUu- -3'
miRNA:   3'- -AGGUaaua-CCCGaUGCCGuUGGUAcg -5'
33401 3' -50.7 NC_007605.1 + 170544 0.66 0.995579
Target:  5'- cCCcUUggGGGCUugGcuggcGCGGCCGgggGCg -3'
miRNA:   3'- aGGuAAuaCCCGAugC-----CGUUGGUa--CG- -5'
33401 3' -50.7 NC_007605.1 + 171604 0.66 0.995579
Target:  5'- cCCcUUggGGGCUugGcuggcGCGGCCGgggGCg -3'
miRNA:   3'- aGGuAAuaCCCGAugC-----CGUUGGUa--CG- -5'
33401 3' -50.7 NC_007605.1 + 170006 0.66 0.995579
Target:  5'- cCCcUUggGGGCUugGcuggcGCGGCCGgggGCg -3'
miRNA:   3'- aGGuAAuaCCCGAugC-----CGUUGGUa--CG- -5'
33401 3' -50.7 NC_007605.1 + 171066 0.66 0.995579
Target:  5'- cCCcUUggGGGCUugGcuggcGCGGCCGgggGCg -3'
miRNA:   3'- aGGuAAuaCCCGAugC-----CGUUGGUa--CG- -5'
33401 3' -50.7 NC_007605.1 + 67150 0.66 0.994844
Target:  5'- cUCCGgca-GGGUgACGGCGGCCGc-- -3'
miRNA:   3'- -AGGUaauaCCCGaUGCCGUUGGUacg -5'
33401 3' -50.7 NC_007605.1 + 49811 0.66 0.994012
Target:  5'- cCCggUAUcgacGGCUGCGGCGGCgGagGCg -3'
miRNA:   3'- aGGuaAUAc---CCGAUGCCGUUGgUa-CG- -5'
33401 3' -50.7 NC_007605.1 + 50362 0.66 0.994012
Target:  5'- gCCGcgGUGGGCUGCccccgaggacgGGCGccggccGCCA-GCg -3'
miRNA:   3'- aGGUaaUACCCGAUG-----------CCGU------UGGUaCG- -5'
33401 3' -50.7 NC_007605.1 + 109861 0.66 0.993075
Target:  5'- aUCCAUUuacuggGGGCUACaggaGGCcACCGacgaGCa -3'
miRNA:   3'- -AGGUAAua----CCCGAUG----CCGuUGGUa---CG- -5'
33401 3' -50.7 NC_007605.1 + 154856 0.66 0.993075
Target:  5'- cCCGag--GGGCgcaGGCGGCUcgGCa -3'
miRNA:   3'- aGGUaauaCCCGaugCCGUUGGuaCG- -5'
33401 3' -50.7 NC_007605.1 + 84601 0.66 0.993075
Target:  5'- gUCAUggagcagaGGGUUAUGGCAACCcuacUGCc -3'
miRNA:   3'- aGGUAaua-----CCCGAUGCCGUUGGu---ACG- -5'
33401 3' -50.7 NC_007605.1 + 156077 0.67 0.992024
Target:  5'- cCCAaga-GGGC-ACGGCAagGCCGgagGCa -3'
miRNA:   3'- aGGUaauaCCCGaUGCCGU--UGGUa--CG- -5'
33401 3' -50.7 NC_007605.1 + 171243 0.67 0.990851
Target:  5'- gUCGgg--GGGCgccGCGcgggcGCAGCCAUGCg -3'
miRNA:   3'- aGGUaauaCCCGa--UGC-----CGUUGGUACG- -5'
33401 3' -50.7 NC_007605.1 + 170705 0.67 0.990851
Target:  5'- gUCGgg--GGGCgccGCGcgggcGCAGCCAUGCg -3'
miRNA:   3'- aGGUaauaCCCGa--UGC-----CGUUGGUACG- -5'
33401 3' -50.7 NC_007605.1 + 170183 0.67 0.990851
Target:  5'- gUCGgg--GGGCgccGCGcgggcGCAGCCAUGCg -3'
miRNA:   3'- aGGUaauaCCCGa--UGC-----CGUUGGUACG- -5'
33401 3' -50.7 NC_007605.1 + 169091 0.67 0.990851
Target:  5'- cCCGgg--GGGCaagcugugggaaUGCGGUGGCCAagUGCa -3'
miRNA:   3'- aGGUaauaCCCG------------AUGCCGUUGGU--ACG- -5'
33401 3' -50.7 NC_007605.1 + 102663 0.67 0.990851
Target:  5'- gCCAUcGUGGGCcacggGgGGCGAgaCAUGUa -3'
miRNA:   3'- aGGUAaUACCCGa----UgCCGUUg-GUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.